RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 PINK1Q9BXM7 581 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 ACTRT3Q9BYD9 372 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 UCK2Q9BZX2 261 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 OCEL1Q9H607 264 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 ZNF226Q9NYT6 803 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 STMN3Q9NZ72 180 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 MAT2BQ9NZL9 334 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 PSORS1C1Q9UIG5 152 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 A4GNTQ9UNA3 340 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 C19orf53Q9UNZ5 99 aaPredicted RBP9.38□□□□□ -0.91
VPS53-202ENST00000389040 MGAT4BQ9UQ53 548 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 LIPT1Q9Y234 373 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 YARS2Q9Y2Z4 477 aaKnown RBP9.38□□□□□ -0.91
VPS53-202ENST00000389040 KCNE3Q9Y6H6 103 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 DSPPQ9NZW4 1301 aa9.38□□□□□ -0.91
VPS53-202ENST00000389040 SCN3AQ9NY46 2000 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 CCDC88CQ9P219 2028 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 A0A1W2PRQ8 180 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 ZAR1LA6NP61 321 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 A8MUA0 341 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 MAN1A2O60476 641 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 EPPINO95925 133 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 LGI1O95970 557 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 ACVR2AP27037 513 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 TRHRP34981 398 aaPredicted RBP9.37□□□□□ -0.91
VPS53-202ENST00000389040 CRISP1P54107 249 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 UGT2B15P54855 530 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 PIN1Q13526 163 aaPredicted RBP9.37□□□□□ -0.91
VPS53-202ENST00000389040 DCTN2Q13561 401 aaKnown RBP9.37□□□□□ -0.91
VPS53-202ENST00000389040 DGCR6Q14129 220 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 ACER2Q5QJU3 275 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 ATAD3BQ5T9A4 648 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 HMGN2P46Q86SG4 172 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 OR2L13Q8N349 312 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 ZNF615Q8N8J6 731 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 OR7G2Q8NG99 324 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 C9orf43Q8TAL5 461 aaPredicted RBP9.37□□□□□ -0.91
VPS53-202ENST00000389040 BRIX1Q8TDN6 353 aaKnown RBP9.37□□□□□ -0.91
VPS53-202ENST00000389040 MYDGFQ969H8 173 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 MS4A4EQ96PG1 132 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 TRNT1Q96Q11 434 aaKnown RBP9.37□□□□□ -0.91
VPS53-202ENST00000389040 MESP1Q9BRJ9 268 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 FUZQ9BT04 418 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 CNPPD1Q9BV87 410 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 OR10A5Q9H207 317 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 TRIM45Q9H8W5 580 aaPredicted RBP9.37□□□□□ -0.91
VPS53-202ENST00000389040 ANKRA2Q9H9E1 313 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 FKBP14Q9NWM8 211 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 CALML5Q9NZT1 146 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 MYOTQ9UBF9 498 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 LHX6Q9UPM6 363 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 ERVK-19Q9WJR5 959 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 PCDHGB6Q9Y5F9 930 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 TRBV11-1A0A0K0K1C0 115 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 SH3PXD2BA1X283 911 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 CLCA1A8K7I4 914 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 MPZL2O60487 215 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 BCAS1O75363 584 aaPredicted RBP9.37□□□□□ -0.91
VPS53-202ENST00000389040 BCL10O95999 233 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 OSMP13725 252 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 ZNF182P17025 639 aaPredicted RBP9.37□□□□□ -0.91
VPS53-202ENST00000389040 PSMB9P28065 219 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 ST13P50502 369 aaKnown RBP9.37□□□□□ -0.91
VPS53-202ENST00000389040 CHRNEQ04844 493 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 CTF1Q16619 201 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 MFSD12Q6NUT3 480 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 PGBD2Q6P3X8 592 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 FAM111BQ6SJ93 734 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 C16orf62Q7Z3J2 963 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 OR6T1Q8NGN1 323 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 SLC7A13Q8TCU3 470 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 ADAMTS15Q8TE58 950 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 YIPF6Q96EC8 236 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 DTNBP1Q96EV8 351 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 ABHD17AQ96GS6 310 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 PRRC1Q96M27 445 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 BCL7BQ9BQE9 202 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 FNDC11Q9BVV2 318 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 QRSL1Q9H0R6 528 aaKnown RBP9.37□□□□□ -0.91
VPS53-202ENST00000389040 SLC25A18Q9H1K4 315 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 SLC38A1Q9H2H9 487 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 GIN1Q9NXP7 522 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 REV1Q9UBZ9 1251 aa9.37□□□□□ -0.91
VPS53-202ENST00000389040 PTPRQQ9UMZ3 2332 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 NUP210LQ5VU65 1888 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 C2orf92A0A1B0GVN3 265 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 A6NL46 340 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 DUXAA6NLW8 204 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 SYT5O00445 386 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 ATXN7O15265 892 aaPredicted RBP9.36□□□□□ -0.91
VPS53-202ENST00000389040 GABARAPO95166 117 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 AGR2O95994 175 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 CDK1P06493 297 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 NAGAP17050 411 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 DRD5P21918 477 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 POU1F1P28069 291 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 CASRP41180 1078 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 NUDT6P53370 316 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 NRG3P56975 720 aa9.36□□□□□ -0.91
VPS53-202ENST00000389040 MLF1P58340 268 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms