RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 C3orf14Q9HBI5 128 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 CLN6Q9NWW5 311 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 CNOT2Q9NZN8 540 aaKnown RBP13.22□□□□□ -0.29
HMGA1-203ENST00000374116 FBXW2Q9UKT8 454 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 RABL2BQ9UNT1 228 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 SLC9A8Q9Y2E8 581 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 IGF2RP11717 2491 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 A0A0G2JPF8 293 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 MEIOCA2RUB1 952 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 EFCAB10A6NFE3 127 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 HNRNPCL2B2RXH8 293 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 HNRNPCL3B7ZW38 293 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 M0R082 166 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 SEMA7AO75326 666 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 SLITRK5O94991 958 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 ALPPP05187 535 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 SLC35G6P0C7Q6 338 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 HNRNPCL4P0DMR1 293 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 MPIP34949 423 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 TGFBR1P36897 503 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 PRKAG1P54619 331 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 PRR5P85299 388 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 SEC23BQ15437 767 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 SYT16Q17RD7 645 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 DEFB134Q4QY38 66 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 LYPD8Q6UX82 237 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 PTCHD4Q6ZW05 846 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 CCDC116Q8IYX3 515 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 ARHGEF39Q8N4T4 335 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 LINC00471Q8N535 108 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 CAMKVQ8NCB2 501 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 OR4D11Q8NGI4 311 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 OR9A4Q8NGU2 314 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 C9orf43Q8TAL5 461 aaPredicted RBP13.21□□□□□ -0.29
HMGA1-203ENST00000374116 TTYH2Q9BSA4 534 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 FUZQ9BT04 418 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 SPRY4Q9C004 299 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 AMBNQ9NP70 447 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 MS4A12Q9NXJ0 267 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 GPR83Q9NYM4 423 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 KCMF1Q9P0J7 381 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 REV1Q9UBZ9 1251 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 KLHL21Q9UJP4 597 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 BOLA1Q9Y3E2 137 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 APC2O95996 2303 aa13.21□□□□□ -0.29
HMGA1-203ENST00000374116 A0A1W2PRQ8 180 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 FITM1A5D6W6 292 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 C12orf71A8MTZ7 269 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 SGK494L7N484 410 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 MEN1O00255 615 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 EMC8O43402 210 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 FOXS1O43638 330 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 OR10H3O60404 316 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 CPNE3O75131 537 aaKnown RBP13.2□□□□□ -0.3
HMGA1-203ENST00000374116 DXOO77932 396 aaKnown RBP13.2□□□□□ -0.3
HMGA1-203ENST00000374116 HMGN2P05204 90 aaKnown RBP13.2□□□□□ -0.3
HMGA1-203ENST00000374116 GCGRP47871 477 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 RFX2P48378 723 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 NUDT6P53370 316 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 OLR1P78380 273 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 MAT1AQ00266 395 aaKnown RBP13.2□□□□□ -0.3
HMGA1-203ENST00000374116 RGS1Q08116 209 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 ST3GAL4Q11206 333 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 IRF3Q14653 427 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 TIGD6Q17RP2 521 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 CREB3L2Q70SY1 520 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 NRARPQ7Z6K4 114 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 RBM45Q8IUH3 476 aaKnown RBP13.2□□□□□ -0.3
HMGA1-203ENST00000374116 B3GNT2Q9NY97 397 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 A4GNTQ9UNA3 340 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 AUP1Q9Y679 476 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 ZNF780BQ9Y6R6 833 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 LGI1O95970 557 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 STSP08842 583 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 DBTP11182 482 aaKnown RBP13.2□□□□□ -0.3
HMGA1-203ENST00000374116 GADD45AP24522 165 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 HLA-DMAP28067 261 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 POU1F1P28069 291 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 SNRPGP62308 76 aaKnown RBP13.2□□□□□ -0.3
HMGA1-203ENST00000374116 BTN3A2P78410 334 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 FOXD4Q12950 439 aaPredicted RBP13.2□□□□□ -0.3
HMGA1-203ENST00000374116 LASP1Q14847 261 aaKnown RBP13.2□□□□□ -0.3
HMGA1-203ENST00000374116 ZNF750Q32MQ0 723 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 RHBDD2Q6NTF9 364 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 B3GNT7Q8NFL0 401 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 OR5T3Q8NGG3 340 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 ZNF675Q8TD23 568 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 MR1Q95460 341 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 MMABQ96EY8 250 aaPredicted RBP13.2□□□□□ -0.3
HMGA1-203ENST00000374116 DMRTB1Q96MA1 342 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 Q96MT0 163 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 SLC30A2Q9BRI3 323 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 ZPBPQ9BS86 351 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 FNDC11Q9BVV2 318 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 CDCA4Q9BXL8 241 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 PINK1Q9BXM7 581 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 ROGDIQ9GZN7 287 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.2□□□□□ -0.3
HMGA1-203ENST00000374116 CFL2Q9Y281 166 aa13.2□□□□□ -0.3
HMGA1-203ENST00000374116 LOC400499M0QZD8 3231 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms