RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 DEFB118Q96PH6 123 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 BRD7Q9NPI1 651 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 MRPL15Q9P015 296 aaKnown RBP15.19■□□□□ 0.02
SDC4-201ENST00000372733 PLEKHM1Q9Y4G2 1056 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 C5orf42Q9H799 3197 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 NPIPA5A0A0B4J1W7 369 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 TEX51A0A1B0GUA7 166 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 SLC22A31A6NKX4 558 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 NPIPA7E9PJI5 369 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 SCAMP1O15126 338 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 NARSO43776 548 aaKnown RBP15.19■□□□□ 0.02
SDC4-201ENST00000372733 HYAL3O43820 417 aaPredicted RBP15.19■□□□□ 0.02
SDC4-201ENST00000372733 HPXP02790 462 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 NPIPA8P0DM63 369 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 FOXK2Q01167 660 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 CRMP1Q14194 572 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 DUSP5Q16690 384 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 ZSWIM7Q19AV6 140 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 ANKRD33Q7Z3H0 272 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 GPALPP1Q8IXQ4 340 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 HAVCR2Q8TDQ0 301 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 POF1BQ8WVV4 589 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 TMEM239Q8WW34 195 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 THAP4Q8WY91 577 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 GCDHQ92947 438 aaPredicted RBP15.19■□□□□ 0.02
SDC4-201ENST00000372733 RSPRY1Q96DX4 576 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 MS4A4EQ96PG1 132 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 MBNL1Q9NR56 388 aaKnown RBP15.19■□□□□ 0.02
SDC4-201ENST00000372733 CMC2Q9NRP2 79 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 CLDND1Q9NY35 253 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 SPHK1Q9NYA1 384 aa15.19■□□□□ 0.02
SDC4-201ENST00000372733 SCN3AQ9NY46 2000 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 TRAV27A0A087WT01 109 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 TRAPPC13A5PLN9 417 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 FAM86C2PA6NEL3 165 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 LRRN3E7EW58 273 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 OR7A10O76100 309 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 ASGR2P07307 311 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 SELENOPP49908 381 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 MMP15P51511 669 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 EEF1A1P68104 462 aaKnown RBP15.18■□□□□ 0.02
SDC4-201ENST00000372733 BTN3A2P78410 334 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 ZNF267Q14586 743 aaPredicted RBP15.18■□□□□ 0.02
SDC4-201ENST00000372733 ZNF234Q14588 700 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 ARHGEF6Q15052 776 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 TMEM65Q6PI78 240 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 BTN2A1Q7KYR7 527 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 GRASPQ7Z6J2 395 aaPredicted RBP15.18■□□□□ 0.02
SDC4-201ENST00000372733 OR2T35Q8NGX2 323 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 RBP7Q96R05 134 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 SPRTNQ9H040 489 aaPredicted RBP15.18■□□□□ 0.02
SDC4-201ENST00000372733 CLEC4MQ9H2X3 399 aaPredicted RBP15.18■□□□□ 0.02
SDC4-201ENST00000372733 LRRN3Q9H3W5 708 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 MTHFD2LQ9H903 347 aaPredicted RBP15.18■□□□□ 0.02
SDC4-201ENST00000372733 CACYBPQ9HB71 228 aaKnown RBP15.18■□□□□ 0.02
SDC4-201ENST00000372733 G3V3Q6 166 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 CD53P19397 219 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 PEBP1P30086 187 aaKnown RBP15.18■□□□□ 0.02
SDC4-201ENST00000372733 HCCSP53701 268 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 KRT33BQ14525 404 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 TRAM1Q15629 374 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 TP53I3Q53FA7 332 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 DMKNQ6E0U4 476 aaPredicted RBP15.18■□□□□ 0.02
SDC4-201ENST00000372733 RANBP3LQ86VV4 465 aaPredicted RBP15.18■□□□□ 0.02
SDC4-201ENST00000372733 NRROSQ86YC3 692 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 OR4N5Q8IXE1 308 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 ZNF527Q8NB42 609 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 TOR1AIP2Q8NFQ8 470 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 OR52E1Q8NGJ3 308 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 SMPDL3BQ92485 455 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 NXPE2Q96DL1 559 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 FLVCR2Q9UPI3 526 aa15.18■□□□□ 0.02
SDC4-201ENST00000372733 A0A1B0GVI7 797 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 TRABD2BA6NFA1 517 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 OTOL1A6NHN0 477 aaPredicted RBP15.17■□□□□ 0.02
SDC4-201ENST00000372733 IFNA7P01567 189 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 ADRB1P08588 477 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 SAGP10523 405 aaPredicted RBP15.17■□□□□ 0.02
SDC4-201ENST00000372733 UBL4AP11441 157 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 TAS2R43P59537 309 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 POU6F2P78424 691 aaPredicted RBP15.17■□□□□ 0.02
SDC4-201ENST00000372733 IKZF1Q13422 519 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 KLF9Q13886 244 aaPredicted RBP15.17■□□□□ 0.02
SDC4-201ENST00000372733 CEBPEQ15744 281 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 AANATQ16613 207 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 FAAH2Q6GMR7 532 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 BPHLQ86WA6 291 aaPredicted RBP15.17■□□□□ 0.02
SDC4-201ENST00000372733 SLC44A3Q8N4M1 653 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 KCT2Q8NC54 265 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 OR2L3Q8NG85 312 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 OR2L8Q8NGY9 312 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 OR51A7Q8NH64 312 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 RPLP0P6Q8NHW5 317 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 TMEM168Q9H0V1 697 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 C20orf85Q9H1P6 137 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 INPP5EQ9NRR6 644 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 ZNF224Q9NZL3 707 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 COPZ2Q9P299 210 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 UBQLN2Q9UHD9 624 aa15.17■□□□□ 0.02
SDC4-201ENST00000372733 ST6GALNAC2Q9UJ37 374 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms