RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 ANKFN1Q8N957 763 aa16.99■□□□□ 0.31
CKS1B-203ENST00000368439 OR2V1Q8NHB1 315 aa16.99■□□□□ 0.31
CKS1B-203ENST00000368439 CKAP2Q8WWK9 683 aa16.99■□□□□ 0.31
CKS1B-203ENST00000368439 SLC38A1Q9H2H9 487 aa16.99■□□□□ 0.31
CKS1B-203ENST00000368439 TCF7L2Q9NQB0 619 aa16.99■□□□□ 0.31
CKS1B-203ENST00000368439 INTS9Q9NV88 658 aaKnown RBP16.99■□□□□ 0.31
CKS1B-203ENST00000368439 PAQR5Q9NXK6 330 aaPredicted RBP16.99■□□□□ 0.31
CKS1B-203ENST00000368439 FAM234BA2RU67 622 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 MSTNO14793 375 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 CTAG2O75638 210 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 CSTAP01040 98 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 CHRM4P08173 479 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 QPRTQ15274 297 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 GTDC1Q4AE62 458 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 TIGD2Q4W5G0 525 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 HMGN2P46Q86SG4 172 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 KIF18BQ86Y91 864 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 FUNDC1Q8IVP5 155 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 GOLGA6L1Q8N7Z2 621 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 CNEP1R1Q8N9A8 125 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 RFWD2Q8NHY2 731 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 PNPT1Q8TCS8 783 aaKnown RBP16.98■□□□□ 0.31
CKS1B-203ENST00000368439 FAM222BQ8WU58 562 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 VPS33AQ96AX1 596 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 MRGPRX4Q96LA9 322 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 KLHL15Q96M94 604 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 TRNT1Q96Q11 434 aaKnown RBP16.98■□□□□ 0.31
CKS1B-203ENST00000368439 CCDC28BQ9BUN5 200 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 THUMPD3Q9BV44 507 aaKnown RBP16.98■□□□□ 0.31
CKS1B-203ENST00000368439 QRSL1Q9H0R6 528 aaKnown RBP16.98■□□□□ 0.31
CKS1B-203ENST00000368439 LIPT1Q9Y234 373 aa16.98■□□□□ 0.31
CKS1B-203ENST00000368439 POLR3GO15318 223 aaPredicted RBP16.97■□□□□ 0.31
CKS1B-203ENST00000368439 UBTFL6P0CB48 400 aaPredicted RBP16.97■□□□□ 0.31
CKS1B-203ENST00000368439 FCGR2AP12318 317 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 HOXB9P17482 250 aaPredicted RBP16.97■□□□□ 0.31
CKS1B-203ENST00000368439 ME2P23368 584 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 AQP5P55064 265 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 CBFBQ13951 182 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 DAZAP2Q15038 168 aaPredicted RBP16.97■□□□□ 0.31
CKS1B-203ENST00000368439 GPAT3Q53EU6 434 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 HBMQ6B0K9 141 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 ZNF474Q6S9Z5 364 aaPredicted RBP16.97■□□□□ 0.31
CKS1B-203ENST00000368439 DNAJC14Q6Y2X3 702 aaPredicted RBP16.97■□□□□ 0.31
CKS1B-203ENST00000368439 LRRC74BQ6ZQY2 392 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 EIF3MQ7L2H7 374 aaKnown RBP16.97■□□□□ 0.31
CKS1B-203ENST00000368439 TMCO5AQ8N6Q1 288 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 LINC01560Q8TB33 94 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 DYDC1Q8WWB3 177 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 GTF2H4Q92759 462 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 MAGEB18Q96M61 343 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 OPN3Q9H1Y3 402 aaPredicted RBP16.97■□□□□ 0.31
CKS1B-203ENST00000368439 COQ10BQ9H8M1 238 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 SLC52A3Q9NQ40 469 aa16.97■□□□□ 0.31
CKS1B-203ENST00000368439 CCDC168Q8NDH2 2452 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 TUBAL3A6NHL2 446 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 CLDN24A6NM45 220 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 ADAM11O75078 769 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 KRT75O95678 551 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 CD8BP10966 210 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 RPS4Y1P22090 263 aaKnown RBP16.96■□□□□ 0.31
CKS1B-203ENST00000368439 SFTPDP35247 375 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 MAGEA8P43361 318 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 PCYT1AP49585 367 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 CCR4P51679 360 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 SIRPAP78324 504 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 KCNJ10P78508 379 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 FAM214BQ7L5A3 538 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 OSTF1Q92882 214 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 ITCHQ96J02 903 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 SRXN1Q9BYN0 137 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 PAIP1Q9H074 479 aaKnown RBP16.96■□□□□ 0.31
CKS1B-203ENST00000368439 RMND5AQ9H871 391 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 TPT1P8Q9HAU6 139 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 SLC35A3Q9Y2D2 325 aa16.96■□□□□ 0.31
CKS1B-203ENST00000368439 AGAP5A6NIR3 686 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 A6NNC1 897 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 SS18L1O75177 396 aaPredicted RBP16.95■□□□□ 0.3
CKS1B-203ENST00000368439 CYP7B1O75881 506 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 SMNDC1O75940 238 aaKnown RBP eCLIP16.95■□□□□ 0.3
CKS1B-203ENST00000368439 EPXP11678 715 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 CD1EP15812 388 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 CPA2P48052 419 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 ANXA11P50995 505 aaKnown RBP16.95■□□□□ 0.3
CKS1B-203ENST00000368439 CARD18P57730 90 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 SESN3P58005 492 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 FAM27E3Q08E93 113 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 SELENBP1Q13228 472 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 ZNF239Q16600 458 aaKnown RBP16.95■□□□□ 0.3
CKS1B-203ENST00000368439 TMEM176BQ3YBM2 270 aaPredicted RBP16.95■□□□□ 0.3
CKS1B-203ENST00000368439 PDSS1Q5T2R2 415 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 SLC2A7Q6PXP3 512 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 BLOC1S3Q6QNY0 202 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 TMEM200AQ86VY9 491 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 STON2Q8WXE9 905 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 ST8SIA1Q92185 356 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 AURKBQ96GD4 344 aaPredicted RBP16.95■□□□□ 0.3
CKS1B-203ENST00000368439 GMPPAQ96IJ6 420 aaPredicted RBP16.95■□□□□ 0.3
CKS1B-203ENST00000368439 EXOSC3Q9NQT5 275 aaKnown RBP16.95■□□□□ 0.3
CKS1B-203ENST00000368439 RASSF1Q9NS23 344 aa16.95■□□□□ 0.3
CKS1B-203ENST00000368439 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms