RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 DNAJB12Q9NXW2 375 aaKnown RBP14.26□□□□□ -0.13
UPF3B-202ENST00000345865 MED31Q9Y3C7 131 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 HEATR5AQ86XA9 2040 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 AGRPO00253 132 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 HRO43593 1189 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 TMCC2O75069 709 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 CTSEP14091 401 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 BMP8BP34820 402 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 HTR3AP46098 478 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 CTBP2P56545 445 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 MAT1AQ00266 395 aaKnown RBP14.26□□□□□ -0.13
UPF3B-202ENST00000345865 ZNF613Q6PF04 617 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 BMP8AQ7Z5Y6 402 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 UBQLNLQ8IYU4 475 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 FAM160A2Q8N612 972 aaPredicted RBP14.26□□□□□ -0.13
UPF3B-202ENST00000345865 ZDHHC1Q8WTX9 485 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 TEAD3Q99594 435 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 ORAI3Q9BRQ5 295 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 RNF32Q9H0A6 362 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 PPIL3Q9H2H8 161 aaKnown RBP14.26□□□□□ -0.13
UPF3B-202ENST00000345865 MARCH7Q9H992 704 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 FOLH1BQ9HBA9 442 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 CLDN16Q9Y5I7 305 aa14.26□□□□□ -0.13
UPF3B-202ENST00000345865 SLC9B1P1A6NJY1 282 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 E9PI62 339 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 FOXS1O43638 330 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 HPGDSO60760 199 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 RCBTB2O95199 551 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 IFI6P09912 130 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 PAICSP22234 425 aaKnown RBP14.25□□□□□ -0.13
UPF3B-202ENST00000345865 APEX1P27695 318 aaKnown RBP14.25□□□□□ -0.13
UPF3B-202ENST00000345865 MAZP56270 477 aaKnown RBP14.25□□□□□ -0.13
UPF3B-202ENST00000345865 NPSR1Q6W5P4 371 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 MCATQ8IVS2 390 aaKnown RBP14.25□□□□□ -0.13
UPF3B-202ENST00000345865 C19orf47Q8N9M1 422 aaKnown RBP14.25□□□□□ -0.13
UPF3B-202ENST00000345865 CYB561A3Q8NBI2 242 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 PEX11GQ96HA9 241 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 TNFRSF13CQ96RJ3 184 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 SOSTQ9BQB4 213 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 ZNF559Q9BR84 538 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 ZNF426Q9BUY5 554 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 OR51V1Q9H2C8 321 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 TMEM27Q9HBJ8 222 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 ASB6Q9NWX5 421 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 NDRG2Q9UN36 371 aaKnown RBP14.25□□□□□ -0.13
UPF3B-202ENST00000345865 GTPBP1O00178 669 aaKnown RBP14.25□□□□□ -0.13
UPF3B-202ENST00000345865 SEC14L5O43304 696 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 CHP2O43745 196 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 MRPL3P09001 348 aaKnown RBP14.25□□□□□ -0.13
UPF3B-202ENST00000345865 CCR5P51681 352 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 BTG2P78543 158 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 SCN1BQ07699 218 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 P2RY14Q15391 338 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.25□□□□□ -0.132e-7■■□□□ 13.1
UPF3B-202ENST00000345865 PRTGQ2VWP7 1150 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 RLN3Q8WXF3 142 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 AP3S1Q92572 193 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 SPACA7Q96KW9 195 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 VSTM2LQ96N03 204 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 LMF2Q9BU23 707 aaKnown RBP14.25□□□□□ -0.13
UPF3B-202ENST00000345865 LRRC61Q9BV99 259 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 HOXD1Q9GZZ0 328 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 C11orf54Q9H0W9 315 aaPredicted RBP14.25□□□□□ -0.13
UPF3B-202ENST00000345865 MMP28Q9H239 520 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 POLE3Q9NRF9 147 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 BABAM2Q9NXR7 383 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 MALT1Q9UDY8 824 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 PCDH15Q96QU1 1955 aa14.25□□□□□ -0.13
UPF3B-202ENST00000345865 TMEM131Q92545 1883 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 PLA2G10O15496 165 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 RNF13O43567 381 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 PPP1R3DO95685 299 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 IGLV3-19P01714 112 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 GYPBP06028 91 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 GAAP10253 952 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 SLC2A5P22732 501 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 NR4A2P43354 598 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 DAB2P98082 770 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 CRMP1Q14194 572 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 NNATQ16517 81 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 PYDC2Q56P42 97 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 CNIH2Q6PI25 160 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 GATAD2AQ86YP4 633 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 CDK20Q8IZL9 346 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 GDPD1Q8N9F7 314 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 RCBTB1Q8NDN9 531 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 OR10H4Q8NGA5 316 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 PMM1Q92871 262 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 RIT1Q92963 219 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 COQ7Q99807 217 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 PPP1R3EQ9H7J1 279 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 ZMIZ1Q9ULJ6 1067 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 THADAQ6YHU6 1953 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 PRR23D1E9PI22 279 aaPredicted RBP14.24□□□□□ -0.13
UPF3B-202ENST00000345865 PRR23D2P0DMB1 279 aaPredicted RBP14.24□□□□□ -0.13
UPF3B-202ENST00000345865 SLC16A1P53985 500 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 ASAH1Q13510 395 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 GALEQ14376 348 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 NDUFAF6Q330K2 333 aa14.24□□□□□ -0.13
UPF3B-202ENST00000345865 ARMC6Q6NXE6 501 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms