RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CSNK1EP49674 416 aaKnown RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 ART1P52961 327 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 MVDP53602 400 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 PNLIPRP1P54315 467 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 NRG3P56975 720 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 PPIAP62937 165 aaKnown RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 RNF4P78317 190 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 CHAF1BQ13112 559 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 NFATC2Q13469 925 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 LY6KQ17RY6 165 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 XKR4Q5GH76 650 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 ENTPD8Q5MY95 495 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 WSCD1Q658N2 575 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 PTCRAQ6ISU1 281 aaPredicted RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 TSSK4Q6SA08 328 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 IL20RBQ6UXL0 311 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 BCDIN3DQ7Z5W3 292 aaKnown RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 GPR142Q7Z601 462 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 NAA40Q86UY6 237 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 GID4Q8IVV7 300 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 KCNRGQ8N5I3 272 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 ZSCAN1Q8NBB4 408 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 DNAAF1Q8NEP3 725 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 OR4F15Q8NGB8 312 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 BRIX1Q8TDN6 353 aaKnown RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 HASPINQ8TF76 798 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 EDAQ92838 391 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 OSTF1Q92882 214 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 PKP4Q99569 1192 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 SEPT5Q99719 369 aaPredicted RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 CIPCQ9C0C6 399 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 FBXW2Q9UKT8 454 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 TRAV1-2A0A0B4J238 106 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 KIAA0355O15063 1070 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 GATBO75879 557 aaKnown RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 ARL6IP5O75915 188 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 ANKRD34CP0C6C1 535 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 ZNF35P13682 527 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 PRG2P13727 222 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 LAP3P28838 519 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 ATP6V1E1P36543 226 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 ACTR1BP42025 376 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 GPR15P49685 360 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 IHHQ14623 411 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 TTLL4Q14679 1199 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 TOMM20Q15388 145 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 RBMS2Q15434 407 aaKnown RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 MS4A13Q5J8X5 152 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 SFRP4Q6FHJ7 346 aaPredicted RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 TCEAL6Q6IPX3 200 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 RAB12Q6IQ22 244 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 LPCAT3Q6P1A2 487 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 C11orf88Q6PI97 169 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 RBMS3Q6XE24 437 aaKnown RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 ABHD13Q7L211 337 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 LINGO2Q7L985 606 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 TMEM200AQ86VY9 491 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 KLBQ86Z14 1044 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 ZFP82Q8N141 532 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 IQCF1Q8N6M8 205 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 HORMAD2Q8N7B1 307 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 POMGNT2Q8NAT1 580 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 RELL2Q8NC24 303 aaPredicted RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 OR2AK2Q8NG84 335 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 APOBEC4Q8WW27 367 aaKnown RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 FCAMRQ8WWV6 532 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 SSX3Q99909 188 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 REEP4Q9H6H4 257 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 GFOD1Q9NXC2 390 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 ARL15Q9NXU5 204 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 RHCGQ9UBD6 479 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 PCDHB10Q9UN67 800 aa7.58□□□□□ -1.2
ATG4A-201ENST00000343524 RPH3AQ9Y2J0 694 aaPredicted RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 ZNF106Q9H2Y7 1883 aaKnown RBP7.58□□□□□ -1.2
ATG4A-201ENST00000343524 TRBV23-1A0A0A0MS06 115 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 WASH3PC4AMC7 463 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 E7EQ34 232 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 NPIPB9F8W1W9 429 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 BLOC1S5-TXNDC5H3BN57 136 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 GOSR2O14653 212 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 FFAR1O14842 300 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 ADAMTS4O75173 837 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 KLHL18O94889 574 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 IGF2P01344 180 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 C1QCP02747 245 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 MT-ND4LP03901 98 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 MT-ND5P03915 603 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 KLK3P07288 261 aaPredicted RBP7.57□□□□□ -1.2
ATG4A-201ENST00000343524 ASGR2P07307 311 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 C8GP07360 202 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 CD63P08962 238 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 HOXC4P09017 264 aaPredicted RBP7.57□□□□□ -1.2
ATG4A-201ENST00000343524 ANXA4P09525 319 aaPredicted RBP7.57□□□□□ -1.2
ATG4A-201ENST00000343524 EPCAMP16422 314 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 ZNF14P17017 642 aaPredicted RBP7.57□□□□□ -1.2
ATG4A-201ENST00000343524 IDSP22304 550 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 NOS3P29474 1203 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 HTR1FP30939 366 aa7.57□□□□□ -1.2
ATG4A-201ENST00000343524 CDKN1CP49918 316 aaPredicted RBP7.57□□□□□ -1.2
ATG4A-201ENST00000343524 LIM2P55344 173 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms