RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 KIAA1324Q6UXG2 1013 aaKnown RBP20.77■□□□□ 0.92
TRIM28-202ENST00000341753 GPALPP1Q8IXQ4 340 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 GANCQ8TET4 914 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 RBPMSQ93062 196 aaKnown RBP20.77■□□□□ 0.92
TRIM28-202ENST00000341753 ORAI1Q96D31 301 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 TMEM168Q9H0V1 697 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 C20orf85Q9H1P6 137 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 ENTPD4Q9Y227 616 aa20.77■□□□□ 0.92
TRIM28-202ENST00000341753 C17orf113A0A1B0GUU1 675 aa20.77■□□□□ 0.91
TRIM28-202ENST00000341753 PRG2P13727 222 aa20.77■□□□□ 0.91
TRIM28-202ENST00000341753 MAKP20794 623 aa20.77■□□□□ 0.91
TRIM28-202ENST00000341753 CERS1P27544 350 aa20.77■□□□□ 0.91
TRIM28-202ENST00000341753 PRPF38BQ5VTL8 546 aaKnown RBP20.77■□□□□ 0.91
TRIM28-202ENST00000341753 SSX6Q7RTT6 188 aa20.77■□□□□ 0.91
TRIM28-202ENST00000341753 GID4Q8IVV7 300 aa20.77■□□□□ 0.91
TRIM28-202ENST00000341753 OR5K2Q8NHB8 316 aa20.77■□□□□ 0.91
TRIM28-202ENST00000341753 GHSRQ92847 366 aa20.77■□□□□ 0.91
TRIM28-202ENST00000341753 PTP4A1Q93096 173 aa20.77■□□□□ 0.91
TRIM28-202ENST00000341753 OR10A4Q9H209 315 aa20.77■□□□□ 0.91
TRIM28-202ENST00000341753 MAB21L2Q9Y586 359 aa20.77■□□□□ 0.91
TRIM28-202ENST00000341753 SPTBN5Q9NRC6 3674 aaKnown RBP20.76■□□□□ 0.91
TRIM28-202ENST00000341753 GKN3PP0CG01 181 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 WDR88Q6ZMY6 472 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 BTN2A1Q7KYR7 527 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 PMEPA1Q969W9 287 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 ZNF707Q96C28 371 aaPredicted RBP20.76■□□□□ 0.91
TRIM28-202ENST00000341753 WDR89Q96FK6 387 aaPredicted RBP20.76■□□□□ 0.91
TRIM28-202ENST00000341753 HCN3Q9P1Z3 774 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 TRANK1O15050 2925 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 A0A1B0GVI7 797 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 LRRN3E7EW58 273 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 UBL3O95164 117 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 ALDOBP05062 364 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 TEAD1P28347 426 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 VEGFCP49767 419 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 BTN1A1Q13410 526 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 THSD4Q6ZMP0 1018 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 PRSS42Q7Z5A4 293 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 SLC16A11Q8NCK7 471 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 ZBTB44Q8NCP5 570 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 COL26A1Q96A83 441 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 LINC00615Q96LM1 132 aaPredicted RBP20.76■□□□□ 0.91
TRIM28-202ENST00000341753 LINC00052Q96N35 136 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 MENTQ9BUN1 341 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 GSX2Q9BZM3 304 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 LRRN3Q9H3W5 708 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 PTTG3PQ9NZH4 202 aa20.76■□□□□ 0.91
TRIM28-202ENST00000341753 AK6Q9Y3D8 172 aaKnown RBP20.76■□□□□ 0.91
TRIM28-202ENST00000341753 UNC119BA6NIH7 251 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 PEPDP12955 493 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 IL9P15248 144 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 BCL6P41182 706 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 SIM1P81133 766 aaPredicted RBP20.75■□□□□ 0.91
TRIM28-202ENST00000341753 SHC2P98077 582 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 DGLUCYQ7Z3D6 616 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 ACOT4Q8N9L9 421 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 SRFBP1Q8NEF9 429 aaKnown RBP20.75■□□□□ 0.91
TRIM28-202ENST00000341753 OR56A1Q8NGH5 318 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 SLC35A4Q96G79 324 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 PGLYRP3Q96LB9 341 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 LGR4Q9BXB1 951 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 POM121CA8CG34 1229 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 PLPP2O43688 288 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 TSPAN9O75954 239 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 ACSM4P0C7M7 580 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 GDNFP39905 211 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 MMP15P51511 669 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 PRR5P85299 388 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 TMEM64Q6YI46 380 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 KCTD20Q7Z5Y7 419 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 GJD3Q8N144 294 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 CDS1Q92903 461 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 PEX11GQ96HA9 241 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 IFT27Q9BW83 186 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 JAM3Q9BX67 310 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 RCE1Q9Y256 329 aa20.75■□□□□ 0.91
TRIM28-202ENST00000341753 ZNF85Q03923 595 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 KLF9Q13886 244 aaPredicted RBP20.74■□□□□ 0.91
TRIM28-202ENST00000341753 TCTE1Q5JU00 501 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 ARL14Q8N4G2 192 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 TEAD3Q99594 435 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 SEC22CQ9BRL7 303 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 B3GNT4Q9C0J1 378 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 ADAM29Q9UKF5 820 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 STON1Q9Y6Q2 735 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 DOCK9Q9BZ29 2069 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 EMC8O43402 210 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 POU3F2P20265 443 aaPredicted RBP20.74■□□□□ 0.91
TRIM28-202ENST00000341753 TP53I3Q53FA7 332 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 FAM111BQ6SJ93 734 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 TPRA1Q86W33 373 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 OR52L1Q8NGH7 329 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 OR13C2Q8NGS9 318 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 ELP4Q96EB1 424 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 ZNF514Q96K75 400 aaPredicted RBP20.74■□□□□ 0.91
TRIM28-202ENST00000341753 C1QTNF2Q9BXJ5 285 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 MS4A7Q9GZW8 240 aaPredicted RBP20.74■□□□□ 0.91
TRIM28-202ENST00000341753 SYNPO2LQ9H987 977 aa20.74■□□□□ 0.91
TRIM28-202ENST00000341753 SIDT1Q9NXL6 827 aaKnown RBP20.74■□□□□ 0.91
TRIM28-202ENST00000341753 RPS6KB2Q9UBS0 482 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms