RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 ZNF454Q8N9F8 522 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ZNF480Q8WV37 535 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 KCNN1Q92952 543 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 KATNBL1Q9H079 304 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ACSL5Q9ULC5 683 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 SNX11Q9Y5W9 270 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ABCA1O95477 2261 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ZDBF2Q9HCK1 2354 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 TRAPPC13A5PLN9 417 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 KDM4EB2RXH2 506 aaPredicted RBP8.16□□□□□ -1.1
RTN3-202ENST00000339997 RFXAPO00287 272 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 LRRTM2O43300 516 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 NUDT21O43809 227 aaKnown RBP8.16□□□□□ -1.1
RTN3-202ENST00000339997 HLA-AP01891 365 aaKnown RBP8.16□□□□□ -1.1
RTN3-202ENST00000339997 VASPP50552 380 aaPredicted RBP8.16□□□□□ -1.1
RTN3-202ENST00000339997 RING1Q06587 406 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 CTU2Q2VPK5 515 aaKnown RBP8.16□□□□□ -1.1
RTN3-202ENST00000339997 DMRTC1Q5HYR2 192 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 METTL11BQ5VVY1 283 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 C3orf33Q6P1S2 294 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 TSSK4Q6SA08 328 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 PAQR9Q6ZVX9 377 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ZNF550Q7Z398 422 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 KDM8Q8N371 416 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ARL14Q8N4G2 192 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 TRAM1L1Q8N609 369 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 TMEM239Q8WW34 195 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 RSC1A1Q92681 617 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 UBXN10Q96LJ8 280 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 HS6ST2Q96MM7 605 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 CNTNAP3BQ96NU0 1288 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 INTS14Q96SY0 518 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 UHRF1Q96T88 793 aaPredicted RBP8.16□□□□□ -1.1
RTN3-202ENST00000339997 RTP3Q9BQQ7 232 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 C20orf24Q9BUV8 137 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 APMAPQ9HDC9 416 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 GMEB2Q9UKD1 530 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 ASB1Q9Y576 335 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 PUS1Q9Y606 427 aaKnown RBP eCLIP8.16□□□□□ -1.1
RTN3-202ENST00000339997 PLCH1Q4KWH8 1693 aa8.16□□□□□ -1.1
RTN3-202ENST00000339997 TSPAN11A1L157 253 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 FZD7O75084 574 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 RAD51DO75771 328 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 LATS1O95835 1130 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 GAAP10253 952 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 CSF2RAP15509 400 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 UGT2B7P16662 529 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 AGTR1P30556 359 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 TBCEQ15813 527 aaPredicted RBP8.15□□□□□ -1.1
RTN3-202ENST00000339997 STK11Q15831 433 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 C11orf91Q3C1V1 193 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 CCSMST1Q4G0I0 132 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 PDZD11Q5EBL8 140 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 AGAP7PQ5VUJ5 663 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 ZNF836Q6ZNA1 936 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 COX15Q7KZN9 410 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 TAS1R1Q7RTX1 841 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 TMEM150AQ86TG1 271 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 MCATQ8IVS2 390 aaKnown RBP8.15□□□□□ -1.1
RTN3-202ENST00000339997 DNAAF1Q8NEP3 725 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 IL17RDQ8NFM7 739 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 OR13C2Q8NGS9 318 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 BPIFA2Q96DR5 249 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 GMLQ99445 158 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 INIPQ9NRY2 104 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 TXNL4BQ9NX01 149 aaKnown RBP8.15□□□□□ -1.1
RTN3-202ENST00000339997 BABAM2Q9NXR7 383 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 LRFN1Q9P244 771 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 GHRLQ9UBU3 117 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 A0A1B0GTL3 188 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 ZC3H12DA2A288 527 aaKnown RBP8.15□□□□□ -1.1
RTN3-202ENST00000339997 A6NLC8 198 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 ADAM12O43184 909 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 BRINP1O60477 761 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 FASLGP48023 281 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 DHPSP49366 369 aaPredicted RBP8.15□□□□□ -1.1
RTN3-202ENST00000339997 BLKP51451 505 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 ZNF41P51814 821 aaPredicted RBP8.15□□□□□ -1.1
RTN3-202ENST00000339997 GPM6BQ13491 265 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 KCNC3Q14003 757 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 GRM7Q14831 915 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 EIF4HQ15056 248 aaKnown RBP8.15□□□□□ -1.1
RTN3-202ENST00000339997 RSU1Q15404 277 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 SLC14A2Q15849 920 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 KIAA0319Q5VV43 1072 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 FAAP20Q6NZ36 180 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 B3GNT9Q6UX72 402 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 TMEM64Q6YI46 380 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 OR10R2Q8NGX6 335 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 ZNF436Q9C0F3 470 aaPredicted RBP8.15□□□□□ -1.1
RTN3-202ENST00000339997 CLMPQ9H6B4 373 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 KCNJ16Q9NPI9 418 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 GLTPQ9NZD2 209 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 TNFP01375 233 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 CD53P19397 219 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 NDUFS1P28331 727 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 ALDH3B2P48448 385 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 PRMT2P55345 433 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 WDR5P61964 334 aaKnown RBP8.15□□□□□ -1.1
RTN3-202ENST00000339997 VEZF1Q14119 521 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms