RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 EPHX3Q9H6B9 360 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 DNAJC4Q9NNZ3 241 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.89□□□□□ -1.79
NEDD4-201ENST00000338963 KLHL8Q9P2G9 620 aaPredicted RBP3.89□□□□□ -1.79
NEDD4-201ENST00000338963 A4GNTQ9UNA3 340 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 TIMM10BQ9Y5J6 103 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 ACKR2O00590 384 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 CCSO14618 274 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 EPHX1P07099 455 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 EPXP11678 715 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 MTHFD2P13995 350 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 CPEP16870 476 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 SAT1P21673 171 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 PTPN6P29350 595 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 AVPR1BP47901 424 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 CRYBB1P53674 252 aaPredicted RBP3.89□□□□□ -1.79
NEDD4-201ENST00000338963 PTTG1IPP53801 180 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 HTD2P86397 168 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 CDK5Q00535 292 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 SSBP1Q04837 148 aaKnown RBP3.89□□□□□ -1.79
NEDD4-201ENST00000338963 SKP2Q13309 424 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 FBXW9Q5XUX1 488 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 GGT6Q6P531 493 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 ENPP6Q6UWR7 440 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 LRRC18Q8N456 261 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 BPIFB2Q8N4F0 458 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 SLC38A9Q8NBW4 561 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 B3GNT7Q8NFL0 401 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 OR5AP2Q8NGF4 316 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 IL31RAQ8NI17 732 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 FBXO32Q969P5 355 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 JAM3Q9BX67 310 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 C1QTNF6Q9BXI9 259 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 HAPLN2Q9GZV7 340 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 GPRC5CQ9NQ84 441 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 NPDC1Q9NQX5 325 aaPredicted RBP3.89□□□□□ -1.79
NEDD4-201ENST00000338963 MEMO1Q9Y316 297 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 UBIAD1Q9Y5Z9 338 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 ROBO2Q9HCK4 1378 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 SPATA31C1P0DKV0 1188 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 MPZP25189 248 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 ITPKBP27987 946 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 SRSF4Q08170 494 aaKnown RBP3.89□□□□□ -1.79
NEDD4-201ENST00000338963 SSX1Q16384 188 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 ISXQ2M1V0 245 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 DNERQ8NFT8 737 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 OR4K2Q8NGD2 314 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 STAG3L4Q8TBR4 150 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 APH1BQ8WW43 257 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 TMEM18Q96B42 140 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 OR5B2Q96R09 309 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 PEBP4Q96S96 227 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 ZFYVE21Q9BQ24 234 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 TBL1YQ9BQ87 522 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 RRAGCQ9HB90 399 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF358Q9NW07 568 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 RCC2Q9P258 522 aaKnown RBP3.89□□□□□ -1.79
NEDD4-201ENST00000338963 SUSD2Q9UGT4 822 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 GPR34Q9UPC5 381 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 EXO1Q9UQ84 846 aaKnown RBP3.89□□□□□ -1.79
NEDD4-201ENST00000338963 ATF5Q9Y2D1 282 aaPredicted RBP3.89□□□□□ -1.79
NEDD4-201ENST00000338963 LSM2Q9Y333 95 aaKnown RBP3.89□□□□□ -1.79
NEDD4-201ENST00000338963 CHST2Q9Y4C5 530 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 TUBGCP6Q96RT7 1819 aa3.89□□□□□ -1.79
NEDD4-201ENST00000338963 XKRY2A2RUG3 117 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 RNASEK-C17orf49H0YIS7 233 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 EIF1AYO14602 144 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SCAMP3O14828 347 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ARPC1BO15143 372 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SMAD9O15198 467 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ICOSLGO75144 302 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SLCO2B1O94956 709 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 AKR7A3O95154 331 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PMS2P2O95744 297 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CD19P15391 556 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 OR10J1P30954 320 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 EIF1AXP47813 144 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CDK8P49336 464 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 BCAMP50895 628 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 AFF3P51826 1226 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 RGS8P57771 180 aaPredicted RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CDK3Q00526 305 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SMN1Q16637 294 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ST3GAL2Q16842 350 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 IFI44LQ53G44 452 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 TECRLQ5HYJ1 363 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 KIAA1211LQ6NV74 962 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF534Q76KX8 674 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SIAH3Q8IW03 269 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 BEST3Q8N1M1 668 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 CELF5Q8N6W0 485 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 C19orf47Q8N9M1 422 aaKnown RBP3.88□□□□□ -1.79
NEDD4-201ENST00000338963 AGBL5Q8NDL9 886 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 OR1N1Q8NGS0 311 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 ORAOV1Q8WV07 137 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SORCS1Q8WY21 1168 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 BOD1Q96IK1 185 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 HSH2DQ96JZ2 352 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 PRRT1Q99946 306 aa3.88□□□□□ -1.79
NEDD4-201ENST00000338963 SULT4A1Q9BR01 284 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms