RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 MARC2Q969Z3 335 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 LMF2Q9BU23 707 aaKnown RBP13.47□□□□□ -0.25
COL7A1-201ENST00000328333 SLC25A32Q9H2D1 315 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 ANHXE9PGG2 379 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 OR2T1O43869 369 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 TMEM127O75204 238 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 CNOT4O95628 575 aaKnown RBP13.47□□□□□ -0.25
COL7A1-201ENST00000328333 NPY6RQ99463 290 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 REV1Q9UBZ9 1251 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 CASP3P42574 277 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 KCNJ5P48544 419 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 KCNQ1P51787 676 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 UBE2G2P60604 165 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 WDR5P61964 334 aaKnown RBP13.47□□□□□ -0.25
COL7A1-201ENST00000328333 SGCAQ16586 387 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 YIF1BQ5BJH7 314 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 GPR137CQ8N3F9 429 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 WDR20Q8TBZ3 569 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 ECHDC3Q96DC8 303 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 OR8D2Q9GZM6 311 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 ISYNA1Q9NPH2 558 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 STYXL1Q9Y6J8 313 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 KCNE1P15382 129 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 ACY1Q03154 408 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 CUTCQ9NTM9 273 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 PPP1R14DQ9NXH3 145 aa13.47□□□□□ -0.25
COL7A1-201ENST00000328333 LOC102723532A0A0G2JNH3 316 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 PNPP00491 289 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 SLC1A3P43003 542 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 INHBCP55103 352 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 RAB1AP62820 205 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 SNTB1Q13884 538 aaKnown RBP13.46□□□□□ -0.25
COL7A1-201ENST00000328333 LEG1Q6P5S2 330 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 VASH1Q7L8A9 365 aaPredicted RBP13.46□□□□□ -0.25
COL7A1-201ENST00000328333 FAM58AQ8N1B3 248 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 SLC5A8Q8N695 610 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 NHLRC2Q8NBF2 726 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 SLC2A13Q96QE2 648 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 RTCAO00442 366 aaKnown RBP13.46□□□□□ -0.25
COL7A1-201ENST00000328333 TAL1P17542 331 aaPredicted RBP13.46□□□□□ -0.25
COL7A1-201ENST00000328333 TRA2BP62995 288 aaKnown RBP13.46□□□□□ -0.25
COL7A1-201ENST00000328333 LBHQ53QV2 105 aaPredicted RBP13.46□□□□□ -0.25
COL7A1-201ENST00000328333 ZNF805Q5CZA5 627 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 KDM8Q8N371 416 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 POLHQ9Y253 713 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 A0A1W2PPK0 400 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 MBP02144 154 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 LMO2P25791 158 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 MLLT10P55197 1068 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 SYT13Q7L8C5 426 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 SLC35F3Q8IY50 421 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 GPR26Q8NDV2 337 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 ANGPTL6Q8NI99 470 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 CERKQ8TCT0 537 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 GRXCR1A8MXD5 290 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 NUPL2O15504 423 aaKnown RBP13.46□□□□□ -0.25
COL7A1-201ENST00000328333 JTBO76095 146 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 PDGFAP04085 211 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 ETV5P41161 510 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 ERVFC1P60507 584 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 EMX1Q04741 257 aaPredicted RBP13.46□□□□□ -0.25
COL7A1-201ENST00000328333 C9orf131Q5VYM1 1079 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 TMEM163Q8TC26 289 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 ESAMQ96AP7 390 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 APOBEC3GQ9HC16 384 aaKnown RBP13.46□□□□□ -0.25
COL7A1-201ENST00000328333 KLHL42Q9P2K6 505 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 B4DXG7 233 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 EFNA3P52797 238 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 SHDQ96IW2 340 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 PRTFDC1Q9NRG1 225 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 GMEB2Q9UKD1 530 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 RASD1Q9Y272 281 aa13.46□□□□□ -0.25
COL7A1-201ENST00000328333 NRMQ8IXM6 262 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 SLC39A13Q96H72 371 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 RPL10LQ96L21 214 aaKnown RBP13.46□□□□□ -0.26
COL7A1-201ENST00000328333 FBRSQ9HAH7 460 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 GPR25O00155 361 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 AGTR2P50052 363 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 OR4D2P58180 307 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 TNK1Q13470 666 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 CST9LP1Q5W188 147 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 CPZQ66K79 652 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 TMEM107Q6UX40 140 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 UMODL1-AS1Q8N2C9 162 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 KDF1Q8NAX2 398 aaPredicted RBP13.46□□□□□ -0.26
COL7A1-201ENST00000328333 ZNF439Q8NDP4 499 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 C1QTNF2Q9BXJ5 285 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 LIN7BQ9HAP6 207 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 NIT2Q9NQR4 276 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 DNAJC15Q9Y5T4 150 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 TAF9Q16594 264 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 PHYHD1Q5SRE7 291 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 C5orf46Q6UWT4 87 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 TMEM175Q9BSA9 504 aa13.46□□□□□ -0.26
COL7A1-201ENST00000328333 KIAA0355O15063 1070 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 FZD7O75084 574 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 C8AP07357 584 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 GDF5P43026 501 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 NPBWR1P48145 328 aa13.45□□□□□ -0.26
COL7A1-201ENST00000328333 RPS24P62847 133 aaKnown RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms