RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 ERVK-21P61565 698 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 ZSWIM7Q19AV6 140 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 WDR88Q6ZMY6 472 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 SYT9Q86SS6 491 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 SRFBP1Q8NEF9 429 aaKnown RBP12.48□□□□□ -0.41
SKA3-202ENST00000314759 OR13C5Q8NGS8 318 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 FANK1Q8TC84 345 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 ADAMTS15Q8TE58 950 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 ST8SIA4Q92187 359 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 C4orf36Q96KX1 117 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 TEAD3Q99594 435 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 SMAD5Q99717 465 aaKnown RBP12.48□□□□□ -0.41
SKA3-202ENST00000314759 REG4Q9BYZ8 158 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 FN3KQ9H479 309 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 STON1Q9Y6Q2 735 aa12.48□□□□□ -0.41
SKA3-202ENST00000314759 NOTCH4Q99466 2003 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 MYO7AQ13402 2215 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 PCP4L1A6NKN8 68 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 TEX46H3BTG2 121 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 J3QLW9 94 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 M0R233 179 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 UBL3O95164 117 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 IL9P15248 144 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 ZNF19P17023 458 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 CD53P19397 219 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 MMP15P51511 669 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 ZNF136P52737 540 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 GBX2P52951 348 aaPredicted RBP12.47□□□□□ -0.41
SKA3-202ENST00000314759 SLC16A1P53985 500 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 OR12D2P58182 307 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 RPS7P62081 194 aaKnown RBP12.47□□□□□ -0.41
SKA3-202ENST00000314759 CDK3Q00526 305 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 TMEM52BQ4KMG9 183 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 FNDC3BQ53EP0 1204 aaKnown RBP12.47□□□□□ -0.41
SKA3-202ENST00000314759 ACSM3Q53FZ2 586 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 HEPHL1Q6MZM0 1159 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 FAM111BQ6SJ93 734 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 ADAMTSL4Q6UY14 1074 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 CFAP77Q6ZQR2 320 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 ESPNLQ6ZVH7 1005 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 ZNF527Q8NB42 609 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 PFN4Q8NHR9 129 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 HAVCR2Q8TDQ0 301 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 CDS1Q92903 461 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 INSM2Q96T92 566 aaPredicted RBP12.47□□□□□ -0.41
SKA3-202ENST00000314759 OR51V1Q9H2C8 321 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 METTL17Q9H7H0 456 aaPredicted RBP12.47□□□□□ -0.41
SKA3-202ENST00000314759 NKIRAS2Q9NYR9 191 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 OR6C2Q9NZP2 312 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 MAB21L2Q9Y586 359 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 RNF215Q9Y6U7 377 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 CARNS1A5YM72 827 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 H2AFB2P0C5Z0 115 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 CLUP10909 449 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 PRG2P13727 222 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 SNRPBP14678 240 aaKnown RBP12.47□□□□□ -0.41
SKA3-202ENST00000314759 HNRNPA1L2Q32P51 320 aaKnown RBP12.47□□□□□ -0.41
SKA3-202ENST00000314759 ZNF836Q6ZNA1 936 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 NLRC3Q7RTR2 1065 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 LNX2Q8N448 690 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 OR2L5Q8NG80 312 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 OR6M1Q8NGM8 313 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 OR2T4Q8NH00 348 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 CXorf40AQ8TE69 158 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 TMEM168Q9H0V1 697 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 COPZ2Q9P299 210 aa12.47□□□□□ -0.41
SKA3-202ENST00000314759 ZNF223Q9UK11 482 aaPredicted RBP12.47□□□□□ -0.41
SKA3-202ENST00000314759 A0A1W2PPK0 400 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 LATO43561 262 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 PEPDP12955 493 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 ATF1P18846 271 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 POU3F2P20265 443 aaPredicted RBP12.46□□□□□ -0.41
SKA3-202ENST00000314759 RAB3BP20337 219 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 NOS3P29474 1203 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 PPM1AP35813 382 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 ZNF85Q03923 595 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 CEBPEQ15744 281 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 FCRLBQ6BAA4 426 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 THSD4Q6ZMP0 1018 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 HDDC2Q7Z4H3 204 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 OR52L1Q8NGH7 329 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 OR51Q1Q8NH59 317 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 GHSRQ92847 366 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 OTUB2Q96DC9 234 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 HS6ST2Q96MM7 605 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 CD180Q99467 661 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 CHIAQ9BZP6 476 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 MTHFD2LQ9H903 347 aaPredicted RBP12.46□□□□□ -0.41
SKA3-202ENST00000314759 SLC6A20Q9NP91 592 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 SDHAF2Q9NX18 166 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 HCN3Q9P1Z3 774 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 FLVCR2Q9UPI3 526 aa12.46□□□□□ -0.41
SKA3-202ENST00000314759 hCG_1807616A0A1W2PRN6 198 aa12.46□□□□□ -0.42
SKA3-202ENST00000314759 CDHR4A6H8M9 788 aa12.46□□□□□ -0.42
SKA3-202ENST00000314759 LGALS8O00214 317 aa12.46□□□□□ -0.42
SKA3-202ENST00000314759 ZNF593O00488 134 aaPredicted RBP12.46□□□□□ -0.42
SKA3-202ENST00000314759 WNT1P04628 370 aa12.46□□□□□ -0.42
SKA3-202ENST00000314759 ADH5P11766 374 aa12.46□□□□□ -0.42
SKA3-202ENST00000314759 BMP7P18075 431 aa12.46□□□□□ -0.42
SKA3-202ENST00000314759 RAB28P51157 221 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms