RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MICAL3Q7RTP6 2002 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 A0A0D9SG52 128 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 hCG_1807616A0A1W2PRN6 198 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 CDHR4A6H8M9 788 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 CSTBP04080 98 aaKnown RBP18.08■□□□□ 0.48
USP48-201ENST00000308271 TIMP2P16035 220 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 FPR3P25089 353 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 SIGIRRQ6IA17 410 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 LRFN4Q6PJG9 635 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 MBOAT2Q6ZWT7 520 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 DOK4Q8TEW6 326 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 S100PBPQ96BU1 408 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 KLHL15Q96M94 604 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 RAD9AQ99638 391 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 PELOQ9BRX2 385 aaKnown RBP18.08■□□□□ 0.48
USP48-201ENST00000308271 ATP13A2Q9NQ11 1180 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 PRDM9Q9NQV7 894 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 SERINC1Q9NRX5 453 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 ZNF443Q9Y2A4 671 aaPredicted RBP18.08■□□□□ 0.48
USP48-201ENST00000308271 SLC6A5Q9Y345 797 aa18.08■□□□□ 0.48
USP48-201ENST00000308271 ZNF736B4DX44 427 aaPredicted RBP18.07■□□□□ 0.48
USP48-201ENST00000308271 S100A11P31949 105 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 LSSP48449 732 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 HTR4Q13639 388 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 PAQR6Q6TCH4 344 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 GPR155Q7Z3F1 870 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 GATSQ8NAP1 163 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 OR5T2Q8NGG2 359 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 ELP5Q8TE02 316 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 ZNF587Q96SQ5 575 aaPredicted RBP18.07■□□□□ 0.48
USP48-201ENST00000308271 URM1Q9BTM9 101 aaKnown RBP18.07■□□□□ 0.48
USP48-201ENST00000308271 MED18Q9BUE0 208 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 ZNF726A6NNF4 738 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 KCNJ13O60928 360 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 ADH1BP00325 375 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 AQP2P41181 271 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 GRASPQ7Z6J2 395 aaPredicted RBP18.07■□□□□ 0.48
USP48-201ENST00000308271 GLB1L2Q8IW92 636 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 HMGB4Q8WW32 186 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 TMEM121BQ9BXQ6 578 aaPredicted RBP18.07■□□□□ 0.48
USP48-201ENST00000308271 DPM1O60762 260 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 H2BFMP0C1H6 154 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 PGFP49763 221 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 TPMTP51580 245 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 CCR6P51684 374 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 CCR9P51686 369 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 ZMAT1Q5H9K5 638 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 ZNF322Q6U7Q0 402 aaPredicted RBP18.07■□□□□ 0.48
USP48-201ENST00000308271 RFLNAQ6ZTI6 216 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 ZNF680Q8NEM1 530 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 CDS1Q92903 461 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 PRTFDC1Q9NRG1 225 aa18.07■□□□□ 0.48
USP48-201ENST00000308271 IGLON5A6NGN9 336 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 ATP6V1G2-DDX39BF2Z307 99 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 UPK1AO00322 258 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 KHNYNO15037 678 aaKnown RBP18.06■□□□□ 0.48
USP48-201ENST00000308271 SNAPINO95295 136 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 TPT1P13693 172 aaKnown RBP18.06■□□□□ 0.48
USP48-201ENST00000308271 FUT1P19526 365 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 VEGFCP49767 419 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 TPBGQ13641 420 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 FAM219BQ5XKK7 198 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 ALG1LQ6GMV1 187 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 MFSD8Q8NHS3 518 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 LGALS14Q8TCE9 139 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 BTAF1O14981 1849 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 DCNP07585 359 aaKnown RBP18.06■□□□□ 0.48
USP48-201ENST00000308271 CYBAP13498 195 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 ELK1P19419 428 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 PRPH2P23942 346 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 PTGER1P34995 402 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 USF2Q15853 346 aaPredicted RBP18.06■□□□□ 0.48
USP48-201ENST00000308271 SLC18B1Q6NT16 456 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 MSRB3Q8IXL7 192 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 NRIP3Q9NQ35 241 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 GABRQQ9UN88 632 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 GAPDHSO14556 408 aaPredicted RBP18.06■□□□□ 0.48
USP48-201ENST00000308271 RGS13O14921 159 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 PEX11BO96011 259 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 RHOP08100 348 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 NR2C1P13056 603 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 SLC29A4Q7RTT9 530 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 SLC35F3Q8IY50 421 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 ARL14Q8N4G2 192 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 EIF5A2Q9GZV4 153 aaKnown RBP18.06■□□□□ 0.48
USP48-201ENST00000308271 EVA1AQ9H8M9 152 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 ACTR10Q9NZ32 417 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 ZNF281Q9Y2X9 895 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 C2orf74A8MZ97 194 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 GFYI3L273 518 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 AKR7A2O43488 359 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 IGFBP6P24592 240 aaPredicted RBP18.06■□□□□ 0.48
USP48-201ENST00000308271 TRIM23P36406 574 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 OPRD1P41143 372 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 KIR2DL3P43628 341 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 TSSK4Q6SA08 328 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 TMEM168Q9H0V1 697 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 HHATLQ9HCP6 504 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 WASH6PQ9NQA3 447 aa18.06■□□□□ 0.48
USP48-201ENST00000308271 HS3ST2Q9Y278 367 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms