RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 SCP2D1Q9UJQ7 156 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 A0A1W2PRD5 423 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 A0A1W2PRF3 423 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 A0A1W2PRM7 423 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 EPOP01588 193 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 RPS18P62269 152 aaKnown RBP7.29□□□□□ -1.24
SCN9A-201ENST00000303354 ZNF616Q08AN1 781 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 MANEALQ5VSG8 457 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 METAP1DQ6UB28 335 aaPredicted RBP7.29□□□□□ -1.24
SCN9A-201ENST00000303354 SLC16A9Q7RTY1 509 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 STOML3Q8TAV4 291 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 NAT6Q93015 286 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 CCDC106Q9BWC9 280 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 TMEM9BQ9NQ34 198 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 KCND3Q9UK17 655 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 TRAPPC13A5PLN9 417 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 PGFP49763 221 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 KIR2DS3Q14952 304 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 ZNF773Q6PK81 442 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 TMEM179BQ7Z7N9 219 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 OR1S1Q8NH92 325 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 TPPP3Q9BW30 176 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 POPDC3Q9HBV1 291 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 PCDH17O14917 1159 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 TACR3P29371 465 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 PM20D1Q6GTS8 502 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 RANBP9Q96S59 729 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 TIMM29Q9BSF4 260 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 SAGE1Q9NXZ1 904 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 EMC9Q9Y3B6 208 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 A0A1W2PNR3 127 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 LGALS8O00214 317 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 BCDIN3DQ7Z5W3 292 aaKnown RBP7.29□□□□□ -1.24
SCN9A-201ENST00000303354 OR8J2Q8NGG1 315 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 C4orf36Q96KX1 117 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 FIZ1Q96SL8 496 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 INIPQ9NRY2 104 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 RLIMQ9NVW2 624 aa7.29□□□□□ -1.24
SCN9A-201ENST00000303354 INTS6Q9UL03 887 aaKnown RBP7.29□□□□□ -1.24
SCN9A-201ENST00000303354 MAGED1Q9Y5V3 778 aaPredicted RBP7.29□□□□□ -1.24
SCN9A-201ENST00000303354 SHISA8B8ZZ34 492 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 HHLA1C9JL84 531 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 AKR7A3O95154 331 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 ITGBL1O95965 494 aaPredicted RBP7.28□□□□□ -1.24
SCN9A-201ENST00000303354 STOMP27105 288 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 DUSP6Q16828 381 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 PAQR9Q6ZVX9 377 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 NDUFAF7Q7L592 441 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 ARHGAP12Q8IWW6 846 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 OR4K5Q8NGD3 323 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 C12orf43Q96C57 262 aaKnown RBP7.28□□□□□ -1.24
SCN9A-201ENST00000303354 MGAT4CQ9UBM8 478 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 LRP6O75581 1613 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 AGPAT2O15120 278 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 IFNA2P01563 188 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 KLKB1P03952 638 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 NDUFB7P17568 137 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 EFR3AQ14156 821 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 LEXMQ3ZCV2 418 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 ARHGAP11AQ6P4F7 1023 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 LCTLQ6UWM7 567 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 TEX26Q8N6G2 289 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 KATNBL1Q9H079 304 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 LRRN3Q9H3W5 708 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 YBX2Q9Y2T7 364 aaKnown RBP7.28□□□□□ -1.24
SCN9A-201ENST00000303354 LOXL2Q9Y4K0 774 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 DRGXA6NNA5 263 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 TOR1AO14656 332 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 LATS1O95835 1130 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 BIDP55957 195 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 SNRPD2P62316 118 aaKnown RBP7.28□□□□□ -1.24
SCN9A-201ENST00000303354 COL28A1Q2UY09 1125 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 ZNF829Q3KNS6 432 aaPredicted RBP7.28□□□□□ -1.24
SCN9A-201ENST00000303354 PAN3Q58A45 887 aaKnown RBP7.28□□□□□ -1.24
SCN9A-201ENST00000303354 OR52N5Q8NH56 324 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 OR5W2Q8NH69 310 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 PIGTQ969N2 578 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 CCDC74BQ96LY2 380 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 OR10A5Q9H207 317 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 PRAMEF27A3QJZ7 478 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 CEBPZOSA8MTT3 80 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 C12orf71A8MTZ7 269 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 TRAPPC2LH3BP13 241 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 KIAA0513O60268 411 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 SLC43A1O75387 559 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 CAV2P51636 162 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 CLDN8P56748 225 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 NKX6-1P78426 367 aaPredicted RBP7.28□□□□□ -1.24
SCN9A-201ENST00000303354 PRAMEF9Q5VWM5 478 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 GFRALQ6UXV0 394 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 OR13C2Q8NGS9 318 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 SLC37A2Q8TED4 501 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 FKBP10Q96AY3 582 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 OR10A2Q9H208 303 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 GPATCH2Q9NW75 528 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 SLC6A14Q9UN76 642 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 LIPT1Q9Y234 373 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 MRPS2Q9Y399 296 aaKnown RBP7.28□□□□□ -1.24
SCN9A-201ENST00000303354 TNFSF11O14788 317 aa7.28□□□□□ -1.24
SCN9A-201ENST00000303354 UTS2O95399 124 aa7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms