RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 KLHL26Q53HC5 615 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 SLC25A53Q5H9E4 307 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 ANKRD26P1Q6NSI1 321 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 KLHL17Q6TDP4 642 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 RNF165Q6ZSG1 346 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 Q6ZSR9 355 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 TRMT10CQ7L0Y3 403 aaKnown RBP13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 ATG4DQ86TL0 474 aaPredicted RBP13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 FBXL14Q8N1E6 418 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 DEPDC4Q8N2C3 294 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 NOA1Q8NC60 698 aaKnown RBP13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 ELOA3Q8NG57 546 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 GPR119Q8TDV5 335 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 FCRL1Q96LA6 429 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 KCNK17Q96T54 332 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 PSD2Q9BQI7 771 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 CACNG6Q9BXT2 260 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 CBLN4Q9NTU7 201 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 ZCCHC3Q9NUD5 404 aaKnown RBP13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 PSMC3IPQ9P2W1 217 aaPredicted RBP13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 B3GALT5Q9Y2C3 310 aa13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 HEATR1Q9H583 2144 aaKnown RBP13.07□□□□□ -0.32
CCDC88B-201ENST00000301897 ANK2Q01484 3957 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 A0A096LNT2 108 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 OR5H1A6NKK0 313 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 G3V2L1 256 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 EIF4E2O60573 245 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 CYTIPO60759 359 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 GLRA3O75311 464 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 PGM3O95394 542 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 CHEK2O96017 543 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 HMGN2P05204 90 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 CSF3P09919 207 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 BMP4P12644 408 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 PRKCAP17252 672 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 SDC1P18827 310 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 ENPP1P22413 925 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 PTAFRP25105 342 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 RPL3P39023 403 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 CASP9P55211 416 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 LASP1Q14847 261 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 CCDC153Q494R4 210 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 ZNF385BQ569K4 471 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 CCNJQ5T5M9 372 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 C3orf33Q6P1S2 294 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 GALNT5Q7Z7M9 940 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 ZNF100Q8IYN0 542 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 MNS1Q8NEH6 495 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 ATP6V1C2Q8NEY4 427 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 TOR1AIP2Q8NFQ8 470 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 FAM120BQ96EK7 910 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 C16orf58Q96GQ5 468 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 TSSK3Q96PN8 268 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 DHRS9Q9BPW9 319 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 KLHDC3Q9BQ90 382 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 CXorf36Q9H7Y0 433 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 EMC3Q9P0I2 261 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 POU2F3Q9UKI9 436 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 FAF1Q9UNN5 650 aaPredicted RBP13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 CARD8Q9Y2G2 431 aa13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 NUP214P35658 2090 aaPredicted RBP13.06□□□□□ -0.32
CCDC88B-201ENST00000301897 ETV2O00321 342 aaPredicted RBP13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 DHRS4L1P0CG22 281 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 TTKP33981 857 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 HPCAL1P37235 193 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 ATP12AP54707 1039 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 CSNK2A1P68400 391 aaPredicted RBP13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 IRX1P78414 480 aaPredicted RBP13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 CBFBQ13951 182 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 CYB5R2Q6BCY4 276 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 C11orf71Q6IPW1 123 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 CDC73Q6P1J9 531 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 CBLN3Q6UW01 205 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 NATD1Q8N6N6 113 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 ZNF433Q8N7K0 673 aaPredicted RBP13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 OR56A1Q8NGH5 318 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 OR5W2Q8NH69 310 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 OR2W6PQ8NHA6 318 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 ADAMTS15Q8TE58 950 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 CDS1Q92903 461 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 ACTRT3Q9BYD9 372 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 SHARPINQ9H0F6 387 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 SERINC1Q9NRX5 453 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 PRSS50Q9UI38 385 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 ING1Q9UK53 422 aaPredicted RBP13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 EMCNQ9ULC0 261 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 DTNAQ9Y4J8 743 aa13.05□□□□□ -0.32
CCDC88B-201ENST00000301897 IGHV3-15A0A0B4J1V0 119 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 TMEM114B3SHH9 223 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 H7C417 338 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 ZNF264O43296 627 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 GPRIN2O60269 458 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 PROCP04070 461 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 IGHV1-2P23083 117 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 CCT5P48643 541 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 RPL38P63173 70 aaKnown RBP13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 PDK3Q15120 406 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 DCST2Q5T1A1 773 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 C1QTNF12Q5T7M4 302 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms