RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 PPIL3Q9H2H8 161 aaKnown RBP8.78□□□□□ -1
CUX1-201ENST00000292535 CT45A6P0DMU7 189 aa8.78□□□□□ -1
CUX1-201ENST00000292535 CT45A5P0DMU8 189 aa8.78□□□□□ -1
CUX1-201ENST00000292535 CT45A7P0DMV0 189 aa8.78□□□□□ -1
CUX1-201ENST00000292535 CT45A8P0DMV1 189 aa8.78□□□□□ -1
CUX1-201ENST00000292535 CT45A9P0DMV2 189 aa8.78□□□□□ -1
CUX1-201ENST00000292535 RAB11AP62491 216 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SF3A2Q15428 464 aaKnown RBP8.78□□□□□ -1
CUX1-201ENST00000292535 CT45A2Q5DJT8 189 aa8.78□□□□□ -1
CUX1-201ENST00000292535 CT45A1Q5HYN5 189 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SLC6A19Q695T7 634 aa8.78□□□□□ -1
CUX1-201ENST00000292535 CT45A3Q8NHU0 189 aa8.78□□□□□ -1
CUX1-201ENST00000292535 OR6C2Q9NZP2 312 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SCN5AQ14524 2016 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SNAPINO95295 136 aa8.78□□□□□ -1
CUX1-201ENST00000292535 MMP12P39900 470 aa8.78□□□□□ -1
CUX1-201ENST00000292535 RGNQ15493 299 aa8.78□□□□□ -1
CUX1-201ENST00000292535 NADSYN1Q6IA69 706 aa8.78□□□□□ -1
CUX1-201ENST00000292535 OSTM1Q86WC4 334 aa8.78□□□□□ -1
CUX1-201ENST00000292535 OR4K13Q8NH42 304 aa8.78□□□□□ -1
CUX1-201ENST00000292535 BOD1Q96IK1 185 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SORCS2Q96PQ0 1159 aa8.78□□□□□ -1
CUX1-201ENST00000292535 MRPL15Q9P015 296 aaKnown RBP8.78□□□□□ -1
CUX1-201ENST00000292535 FAM83HQ6ZRV2 1179 aaPredicted RBP8.78□□□□□ -1
CUX1-201ENST00000292535 TMEM151AQ8N4L1 468 aa8.78□□□□□ -1
CUX1-201ENST00000292535 FIBINQ8TAL6 211 aa8.78□□□□□ -1
CUX1-201ENST00000292535 IGSF8Q969P0 613 aa8.78□□□□□ -1
CUX1-201ENST00000292535 TEX10Q9NXF1 929 aaPredicted RBP8.78□□□□□ -1
CUX1-201ENST00000292535 PAQR5Q9NXK6 330 aaPredicted RBP8.78□□□□□ -1
CUX1-201ENST00000292535 F5H5P2 479 aa8.78□□□□□ -1
CUX1-201ENST00000292535 OR7A17O14581 309 aa8.78□□□□□ -1
CUX1-201ENST00000292535 KCNK2O95069 426 aa8.78□□□□□ -1
CUX1-201ENST00000292535 NDUFB2O95178 105 aa8.78□□□□□ -1
CUX1-201ENST00000292535 OR52W1Q6IF63 320 aa8.78□□□□□ -1
CUX1-201ENST00000292535 CCBE1Q6UXH8 406 aaPredicted RBP8.78□□□□□ -1
CUX1-201ENST00000292535 ASRGL1Q7L266 308 aa8.78□□□□□ -1
CUX1-201ENST00000292535 OR5D14Q8NGL3 314 aa8.78□□□□□ -1
CUX1-201ENST00000292535 PLEKHO2Q8TD55 490 aa8.78□□□□□ -1
CUX1-201ENST00000292535 TIMD4Q96H15 378 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SNCAP37840 140 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SOX3P41225 446 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SELENOWP63302 87 aa8.78□□□□□ -1
CUX1-201ENST00000292535 GPR155Q7Z3F1 870 aa8.78□□□□□ -1
CUX1-201ENST00000292535 LRRC28Q86X40 367 aaPredicted RBP8.78□□□□□ -1
CUX1-201ENST00000292535 PPP1R3BQ86XI6 285 aa8.78□□□□□ -1
CUX1-201ENST00000292535 BRIX1Q8TDN6 353 aaKnown RBP8.78□□□□□ -1
CUX1-201ENST00000292535 ELMOD3Q96FG2 381 aa8.78□□□□□ -1
CUX1-201ENST00000292535 COQ10AQ96MF6 247 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SLC12A9Q9BXP2 914 aa8.78□□□□□ -1
CUX1-201ENST00000292535 TP63Q9H3D4 680 aaPredicted RBP8.78□□□□□ -1
CUX1-201ENST00000292535 BTNL2Q9UIR0 455 aa8.78□□□□□ -1
CUX1-201ENST00000292535 MED13Q9UHV7 2174 aa8.78□□□□□ -1
CUX1-201ENST00000292535 A0A1W2PQL4 384 aaPredicted RBP8.78□□□□□ -1
CUX1-201ENST00000292535 TSPAN11A1L157 253 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SDC3O75056 442 aa8.78□□□□□ -1
CUX1-201ENST00000292535 GRB7Q14451 532 aa8.78□□□□□ -1
CUX1-201ENST00000292535 FAM212BQ9NTI7 297 aaPredicted RBP8.78□□□□□ -1
CUX1-201ENST00000292535 OR5H15A6NDH6 313 aa8.78□□□□□ -1
CUX1-201ENST00000292535 OR5H14A6NHG9 310 aa8.78□□□□□ -1
CUX1-201ENST00000292535 OR5H1A6NKK0 313 aa8.78□□□□□ -1
CUX1-201ENST00000292535 TMEM212A6NML5 194 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SGK494L7N484 410 aa8.78□□□□□ -1
CUX1-201ENST00000292535 GPR4P46093 362 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SH3BP2P78314 561 aa8.78□□□□□ -1
CUX1-201ENST00000292535 C14orf80Q86SX3 495 aa8.78□□□□□ -1
CUX1-201ENST00000292535 NPLOC4Q8TAT6 608 aa8.78□□□□□ -1
CUX1-201ENST00000292535 B3GAT1Q9P2W7 334 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SIX4Q9UIU6 781 aa8.78□□□□□ -1
CUX1-201ENST00000292535 TRAPPC2LQ9UL33 140 aa8.78□□□□□ -1
CUX1-201ENST00000292535 CACNG2Q9Y698 323 aa8.78□□□□□ -1
CUX1-201ENST00000292535 DENRO43583 198 aaKnown RBP8.78□□□□□ -1
CUX1-201ENST00000292535 LCKP06239 509 aa8.78□□□□□ -1
CUX1-201ENST00000292535 CTSAP10619 480 aa8.78□□□□□ -1
CUX1-201ENST00000292535 HLA-DOBP13765 273 aa8.78□□□□□ -1
CUX1-201ENST00000292535 MYF6P23409 242 aa8.78□□□□□ -1
CUX1-201ENST00000292535 MFGE8Q08431 387 aaPredicted RBP8.78□□□□□ -1
CUX1-201ENST00000292535 PLAG1Q6DJT9 500 aa8.78□□□□□ -1
CUX1-201ENST00000292535 RBMXL1Q96E39 390 aaKnown RBP8.78□□□□□ -1
CUX1-201ENST00000292535 VRTNQ9H8Y1 702 aa8.78□□□□□ -1
CUX1-201ENST00000292535 ANKMY1Q9P2S6 941 aa8.78□□□□□ -1
CUX1-201ENST00000292535 TRBV11-1A0A0K0K1C0 115 aa8.77□□□□□ -1
CUX1-201ENST00000292535 GAPDHSO14556 408 aaPredicted RBP8.77□□□□□ -1
CUX1-201ENST00000292535 YKT6O15498 198 aa8.77□□□□□ -1
CUX1-201ENST00000292535 SNCGO76070 127 aa8.77□□□□□ -1
CUX1-201ENST00000292535 CDK1P06493 297 aa8.77□□□□□ -1
CUX1-201ENST00000292535 DEFA4P12838 97 aa8.77□□□□□ -1
CUX1-201ENST00000292535 HOXA1P49639 335 aaPredicted RBP8.77□□□□□ -1
CUX1-201ENST00000292535 EMP2P54851 167 aa8.77□□□□□ -1
CUX1-201ENST00000292535 GALNT1Q10472 559 aaPredicted RBP8.77□□□□□ -1
CUX1-201ENST00000292535 NKPD1Q17RQ9 610 aa8.77□□□□□ -1
CUX1-201ENST00000292535 BLOC1S3Q6QNY0 202 aa8.77□□□□□ -1
CUX1-201ENST00000292535 MMP21Q8N119 569 aa8.77□□□□□ -1
CUX1-201ENST00000292535 ZNF696Q9H7X3 374 aa8.77□□□□□ -1
CUX1-201ENST00000292535 SIDT1Q9NXL6 827 aaKnown RBP8.77□□□□□ -1
CUX1-201ENST00000292535 ENPP4Q9Y6X5 453 aa8.77□□□□□ -1
CUX1-201ENST00000292535 DDAH2O95865 285 aa8.77□□□□□ -1
CUX1-201ENST00000292535 WNT11O96014 354 aa8.77□□□□□ -1
CUX1-201ENST00000292535 CD6P30203 668 aa8.77□□□□□ -1
CUX1-201ENST00000292535 PRSS3P35030 304 aa8.77□□□□□ -1
CUX1-201ENST00000292535 RNF144AP50876 292 aaPredicted RBP8.77□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms