RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 A0A1W2PPC1 479 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 SOCS6O14544 535 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 DYRK3O43781 588 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 GLB1P16278 677 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 TPBGQ13641 420 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 PLK5Q496M5 336 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 PLBD1Q6P4A8 553 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 LHFPL3Q86UP9 236 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 CADM2Q8N3J6 435 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 KLHL36Q8N4N3 616 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 OR4F15Q8NGB8 312 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 OR1F2PQ96R84 312 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 ARHGAP9Q9BRR9 750 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 ZNF426Q9BUY5 554 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 DUSP15Q9H1R2 295 aaPredicted RBP11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 PNO1Q9NRX1 252 aaKnown RBP11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 LANCL2Q9NS86 450 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 RHBDL2Q9NX52 303 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 TNFRSF10DQ9UBN6 386 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 BAIAP2Q9UQB8 552 aa11.92□□□□□ -0.5
SPTLC1-201ENST00000262554 A0A075B6Q4 140 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 PNMA8CA0A1B0GUJ8 204 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SYNDIG1LA6NDD5 238 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SERINC4A6NH21 518 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 FAM183AA6NL82 134 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 EFCAB7A8K855 629 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SLC30A4O14863 429 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 ADAM11O75078 769 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 CSTAP01040 98 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 IGHA1P01876 353 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 PAICSP22234 425 aaKnown RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 RPS19P39019 145 aaKnown RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 OR1D4P47884 311 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 RORCP51449 518 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 PRSS12P56730 875 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 FOXK2Q01167 660 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 IFITM3Q01628 133 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SNAP47Q5SQN1 464 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SLC35F1Q5T1Q4 408 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 ARMC4Q5T2S8 1044 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 NIPAL3Q6P499 406 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 LINC00114Q6XXX2 140 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 OAFQ86UD1 273 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 GPR135Q8IZ08 494 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SLC43A2Q8N370 569 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 NACC2Q96BF6 587 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SENP5Q96HI0 755 aaPredicted RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 KCNS3Q9BQ31 491 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 TMUB1Q9BVT8 246 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 JAM3Q9BX67 310 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 ENKD1Q9H0I2 346 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 ENAMQ9NRM1 1142 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 CMC2Q9NRP2 79 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 TXNL4BQ9NX01 149 aaKnown RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 TRIOO75962 3097 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 PRUNE2Q8WUY3 3088 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 DNAH14Q0VDD8 3507 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 TNRC18O15417 2968 aaPredicted RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 TRAV27A0A087WT01 109 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 A0A1B0GVT2 93 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 RIIAD1A6NNX1 92 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 PRR23D1E9PI22 279 aaPredicted RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 H3BMH7 237 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 K7ESF4 209 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 POLR1CO15160 346 aaPredicted RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 PTP4A3O75365 173 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 RFPL3O75679 317 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 UPK1BO75841 260 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 CLPSP04118 112 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 PRR23D2P0DMB1 279 aaPredicted RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 PSMD7P51665 324 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 GPR143P51810 404 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 COPZ1P61923 177 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 GPLD1P80108 840 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 OXA1LQ15070 435 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 ZNF181Q2M3W8 571 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SPANXN2Q5MJ10 180 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 PRPF38BQ5VTL8 546 aaKnown RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 NUP210LQ5VU65 1888 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 KIRREL2Q6UWL6 708 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 THSD4Q6ZMP0 1018 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 RTL4Q6ZR62 310 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 MED25Q71SY5 747 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 MEPCEQ7L2J0 689 aaKnown RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 GATAD2AQ86YP4 633 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SNX29P2Q8IUI4 249 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 TMEM151BQ8IW70 566 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 SLC35F3Q8IY50 421 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 ZNF440Q8IYI8 595 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 D2HGDHQ8N465 521 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 Q8N9G6 341 aaPredicted RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 C7orf57Q8NEG2 295 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 OR4C3Q8NH37 302 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 OR52N1Q8NH53 320 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 OR51A7Q8NH64 312 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 OR4C6Q8NH72 309 aa11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 PTPMT1Q8WUK0 201 aaPredicted RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 DNAJA4Q8WW22 397 aaPredicted RBP11.91□□□□□ -0.5
SPTLC1-201ENST00000262554 TM9SF4Q92544 642 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms