RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 TSTQ16762 297 aaKnown RBP10.7□□□□□ -0.7
VPS4A-201ENST00000254950 GTF2IRD2BQ6EKJ0 949 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 Q6ZPB1 254 aaPredicted RBP10.7□□□□□ -0.7
VPS4A-201ENST00000254950 GTF2IRD2Q86UP8 949 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 ACBD7Q8N6N7 88 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 HRASLS5Q96KN8 279 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 NAA11Q9BSU3 229 aaPredicted RBP10.7□□□□□ -0.7
VPS4A-201ENST00000254950 NEK6Q9HC98 313 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 TIGARQ9NQ88 270 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 SIDT1Q9NXL6 827 aaKnown RBP10.7□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF337Q9Y3M9 751 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 CACNA1HO95180 2353 aa10.7□□□□□ -0.7
VPS4A-201ENST00000254950 MN1Q10571 1320 aaPredicted RBP10.7□□□□□ -0.7
VPS4A-201ENST00000254950 A0A087WUU8 490 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 PRAMEF25A6NGN4 478 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 A6NL46 340 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 CLDN24A6NM45 220 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 SLC22A1O15245 554 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 PLGP00747 810 aaPredicted RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 PNLIPRP2P54317 469 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 RRADP55042 308 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 PRAMEF20Q5VT98 475 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 PGBD2Q6P3X8 592 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 LANCL3Q6ZV70 420 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 MARCH3Q86UD3 253 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 CACTIN-AS1Q8N1I8 211 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 TMEM105Q8N8V8 129 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 FAM181AQ8N9Y4 354 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 PSMA8Q8TAA3 256 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 TUBA1CQ9BQE3 449 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 RNF6Q9Y252 685 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 IER3IP1Q9Y5U9 82 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 HTR3EA5X5Y0 456 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 C19orf67A6NJJ6 358 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 J3QLW9 94 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 M0R129 80 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 PRODHO43272 600 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 PRKNO60260 465 aaPredicted RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 CT62P0C5K7 136 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF19P17023 458 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 PTPN6P29350 595 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 SFTPDP35247 375 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 MAP2K4P45985 399 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 ACTC1P68032 377 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 ACTA1P68133 377 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 TLE3Q04726 772 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF367Q7RTV3 350 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 OR2T4Q8NH00 348 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 TMEM255BQ8WV15 326 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 C7orf34Q96L11 122 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 SFXN2Q96NB2 322 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 WWTR1Q9GZV5 400 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 TMEM185BQ9H7F4 350 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 SRA1Q9HD15 236 aaKnown RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 ATP13A2Q9NQ11 1180 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 RPH3AQ9Y2J0 694 aaPredicted RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 RIF1Q5UIP0 2472 aaKnown RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 TICRRQ7Z2Z1 1910 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 TRAV27A0A087WT01 109 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 GJE1A6NN92 205 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 KIAA0513O60268 411 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 CBX7O95931 251 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 MT-ND5P03915 603 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 DRD5P21918 477 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 MMP11P24347 488 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 FPR3P25089 353 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 DLSTP36957 453 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 RNF4P78317 190 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 CWF19L1Q69YN2 538 aaKnown RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 ARL9Q6T311 187 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 NKAIN4Q8IVV8 208 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 UBQLNLQ8IYU4 475 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 OR8H2Q8N162 312 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 OR13C2Q8NGS9 318 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 NXPE2Q96DL1 559 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 C11orf24Q96F05 449 aaPredicted RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 COMMD4Q9H0A8 199 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 GABARAPL1Q9H0R8 117 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 PRO3102Q9H379 93 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF160Q9HCG1 818 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 OCIAD1Q9NX40 245 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 NPIPA2E9PIF3 369 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 NPIPA3F8WFD2 350 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 ACOT7O00154 380 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 MRPS14O60783 128 aaKnown RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 MRPL3P09001 348 aaKnown RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 NOVA1P51513 510 aaKnown RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 POLR2HP52434 150 aaKnown RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 ADARB1P78563 741 aaKnown RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 POU4F2Q12837 409 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 TRIP6Q15654 476 aaKnown RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 CNPY1Q3B7I2 92 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 SLC22A10Q63ZE4 541 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 NLGN4XQ8N0W4 816 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 C10orf111Q8N326 155 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 CYB561A3Q8NBI2 242 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF501Q96CX3 271 aaPredicted RBP10.69□□□□□ -0.7
VPS4A-201ENST00000254950 IP6K3Q96PC2 410 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 EGLN3Q9H6Z9 239 aa10.69□□□□□ -0.7
VPS4A-201ENST00000254950 CENPMQ9NSP4 180 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms