RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 PJVKQ0ZLH3 352 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 SLC39A12Q504Y0 691 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 ISCA2Q86U28 154 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 SIAH3Q8IW03 269 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 SULF2Q8IWU5 870 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 RIMKLAQ8IXN7 391 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 SYNPRQ8TBG9 265 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 CXorf58Q96LI9 332 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 ESRP2Q9H6T0 727 aaKnown RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 TREX1Q9NSU2 369 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 DNAJB11Q9UBS4 358 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 KCNG2Q9UJ96 466 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM210A6NLX4 147 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 E5RGE8 158 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 PHOX2AO14813 284 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 PRSS23O95084 383 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 CAPNS1P04632 268 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 ARAFP10398 606 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 HOXB9P17482 250 aaPredicted RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 HNF1AP20823 631 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 IDSP22304 550 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 PBX2P40425 430 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 DAPP51397 102 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 MMP15P51511 669 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 RAB30Q15771 203 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 FAM209BQ5JX69 171 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF620Q6ZNG0 422 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 SERPINA12Q8IW75 414 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 SYS1Q8N2H4 156 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 MITD1Q8WV92 249 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 HAS2Q92819 552 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 FUBP1Q96AE4 644 aaKnown RBP4.4□□□□□ -1.71
SCN1A-220ENST00000641603 MAP3K3Q99759 626 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 PELI2Q9HAT8 420 aa4.4□□□□□ -1.71
SCN1A-220ENST00000641603 TRAV1-2A0A0B4J238 106 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 NPIPA2E9PIF3 369 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 PRAMEF11O60813 436 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 F2P00734 622 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 INHBBP09529 407 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 HTR1FP30939 366 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TNFSF9P41273 254 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 HBG1P69891 147 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 HBG2P69892 147 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 INTS5Q6P9B9 1019 aaKnown RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TCTEX1D1Q8N7M0 179 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 OR56B2PQ8NGI1 322 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 BORCS7Q96B45 105 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 NICN1Q9BSH3 213 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 PTDSS2Q9BVG9 487 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 OR8D2Q9GZM6 311 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 SRA1Q9HD15 236 aaKnown RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 SLC2A9Q9NRM0 540 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 COQ3Q9NZJ6 369 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CPNE7Q9UBL6 633 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 WDR45Q9Y484 360 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CTDSPLO15194 276 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 PTHP01270 115 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CT45A8P0DMV1 189 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CT45A9P0DMV2 189 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 GPX2P18283 190 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 FPR3P25089 353 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 PBLDP30039 288 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 GGT5P36269 586 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 SOX3P41225 446 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 DVL1P1P54792 670 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ENPP2Q13822 863 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF239Q16600 458 aaKnown RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CT45A2Q5DJT8 189 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 OR13C3Q8NGS6 347 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 OR8S1Q8NH09 359 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 GPR137Q96N19 417 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 SLC5A7Q9GZV3 580 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ACKR4Q9NPB9 350 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 SLC35A3Q9Y2D2 325 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TRAV19A0A0A6YYK7 116 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 NPIPA5A0A0B4J1W7 369 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TP73O15350 636 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 B4GAT1O43505 415 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CRYABP02511 175 aaKnown RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 OPN1SWP03999 348 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 LGALS2P05162 132 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF679Q8IYX0 411 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 PPTC7Q8NI37 304 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 HMCESQ96FZ2 354 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 BSCL2Q96G97 398 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 LRIG1Q96JA1 1093 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 SPATC1LQ9H0A9 340 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 FGF20Q9NP95 211 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 MSCO60682 206 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 NIPSNAP2O75323 286 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 MT-ND4P03905 459 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 CHRM2P08172 466 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 PTHLHP12272 177 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ITGB7P26010 798 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 TACR3P29371 465 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 SH3BP2P78314 561 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 PMPCAQ10713 525 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 ENDOGQ14249 297 aaKnown RBP4.39□□□□□ -1.71
SCN1A-220ENST00000641603 PAGE3Q5JUK9 113 aa4.39□□□□□ -1.71
SCN1A-220ENST00000641603 RANBP10Q6VN20 620 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms