RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 TPT1P13693 172 aaKnown RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 ANXA8P13928 327 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 ELK4P28324 431 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 ARR3P36575 388 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 YPEL5P62699 121 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 GPLD1P80108 840 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 EXOSC2Q13868 293 aaKnown RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 TBC1D28Q2M2D7 210 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 UBE2UQ5VVX9 321 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 OR4F3Q6IEY1 312 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 VWA1Q6PCB0 445 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 CXCL17Q6UXB2 119 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 TPRG1Q6ZUI0 275 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 TMPRSS11BQ86T26 416 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 GLB1L3Q8NCI6 653 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 MARCH1Q8TCQ1 289 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 BCL7CQ8WUZ0 217 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 TRUB1Q8WWH5 349 aaKnown RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 KIAA1191Q96A73 305 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 CXXC1Q9P0U4 656 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 PCYOX1Q9UHG3 505 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 SPATA31D1Q6ZQQ2 1576 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 NUP210Q8TEM1 1887 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 UBR5O95071 2799 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 DISP2A7MBM2 1401 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF815PA8K554 130 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 PP2D1A8MPX8 630 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 BTNL10A8MVZ5 291 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 GOSR2O14653 212 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 SUSD5O60279 629 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 GPIP06744 558 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 GKN3PP0CG01 181 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 GLRA2P23416 452 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 HLA-FP30511 346 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 RBMXP38159 391 aaKnown RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 GSCP56915 257 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 ACTG2P63267 376 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 OGDHQ02218 1023 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 HABP2Q14520 560 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF404Q494X3 552 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 IFI44LQ53G44 452 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 PIGGQ5H8A4 983 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 EEF1AKMT2Q5JPI9 291 aaKnown RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 ANKRD54Q6NXT1 300 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 ZDHHC1Q8WTX9 485 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 PCNPQ8WW12 178 aaKnown RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 CMTM7Q96FZ5 175 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 KCNC2Q96PR1 638 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 CD180Q99467 661 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 TSPAN10Q9H1Z9 355 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 PORCNQ9H237 461 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 GNB4Q9HAV0 340 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 IL26Q9NPH9 171 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 FBXO6Q9NRD1 293 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 LYRM2Q9NU23 88 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 SIRT5Q9NXA8 310 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 TIMM22Q9Y584 194 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 FAM237BA0A1B0GVD1 139 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 TCRBV21S2A2A0A5A6 115 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 ELOVL7A1L3X0 281 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 INMT-MINDY4F8WBC2 141 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 H3BNC9 293 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 ARL6IP5O75915 188 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 RPS17P08708 135 aaKnown RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 FURINP09958 794 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 BMP6P22004 513 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 GNPDA1P46926 289 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 SULT1A2P50226 295 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 VASPP50552 380 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 CLDN8P56748 225 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 HNRNPA0Q13151 305 aaKnown RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 UGCGQ16739 394 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 SH3PXD2AQ5TCZ1 1133 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 CFAP77Q6ZQR2 320 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 BAGE3Q86Y29 109 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 BAGE2Q86Y30 109 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 MARCH9Q86YJ5 346 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 CD99L2Q8TCZ2 262 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 SECTM1Q8WVN6 248 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 STON2Q8WXE9 905 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 TBC1D20Q96BZ9 403 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 CDKN2AIPNLQ96HQ2 116 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 SLC6A7Q99884 636 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 VGLL1Q99990 258 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 GLIS2Q9BZE0 524 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 CHRNA10Q9GZZ6 450 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 OR51E2Q9H255 320 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 C14orf119Q9NWQ9 140 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 SLC22A7Q9Y694 548 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 NFASCO94856 1347 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 PARP14Q460N5 1801 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 KIR2DS5A0A0G2JLQ3 304 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 A0A0G2JNG1 304 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 H3BQ06 376 aaPredicted RBP2.63□□□□□ -1.99
SCN1A-219ENST00000641575 KIR2DS3K7RE56 304 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 SCELO95171 688 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 LINC00032P0C843 101 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 GZMAP12544 262 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 HGFP14210 728 aa2.63□□□□□ -1.99
SCN1A-219ENST00000641575 HIST1H1TP22492 207 aaPredicted RBP2.63□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms