RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 B3GNT4Q9C0J1 378 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 CDCP1Q9H5V8 836 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 GALNT9Q9HCQ5 603 aa18.41■□□□□ 0.54
CLN3-250ENST00000636839 TESQ9UGI8 421 aaKnown RBP18.41■□□□□ 0.54
CLN3-250ENST00000636839 A0A1B0GWA3 101 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 TRAPPC13A5PLN9 417 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 B4DXG7 233 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 WISP1O95388 367 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 ZNF117Q03924 483 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 VASH2Q86V25 355 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 P3H2Q8IVL5 708 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 APLFQ8IW19 511 aaPredicted RBP18.4■□□□□ 0.54
CLN3-250ENST00000636839 MARVELD2Q8N4S9 558 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 MUS81Q96NY9 551 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 ANKRD60Q9BZ19 345 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 SLC35A3Q9Y2D2 325 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 HRH3Q9Y5N1 445 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 ALG1L2C9J202 215 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 GNB5O14775 395 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 ZNF264O43296 627 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 NDUFB5O43674 189 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 OR6B1O95007 311 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 ANGPTL1O95841 491 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 ANXA8P13928 327 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 ADH7P40394 386 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 CLK3P49761 638 aaKnown RBP18.4■□□□□ 0.54
CLN3-250ENST00000636839 EPS8Q12929 822 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 CAMK2BQ13554 666 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 B3GNTL1Q67FW5 361 aaPredicted RBP18.4■□□□□ 0.54
CLN3-250ENST00000636839 KLHL17Q6TDP4 642 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 ZNF730Q6ZMV8 503 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 TMCO5AQ8N6Q1 288 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 ADAMTS17Q8TE56 1095 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 ZNF559Q9BR84 538 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 Q9H521 79 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 PAPOLBQ9NRJ5 636 aaKnown RBP18.4■□□□□ 0.54
CLN3-250ENST00000636839 ORC6Q9Y5N6 252 aa18.4■□□□□ 0.54
CLN3-250ENST00000636839 AKAP13Q12802 2813 aa18.39■□□□□ 0.54
CLN3-250ENST00000636839 HCRTR2O43614 444 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 FMO6PO60774 539 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 GSSP48637 474 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 RAD23AP54725 363 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 ZNF550Q7Z398 422 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 SIRT6Q8N6T7 355 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 DUSP19Q8WTR2 217 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 SLC38A4Q969I6 547 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 PSD2Q9BQI7 771 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 TMEM27Q9HBJ8 222 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 PCNX3Q9H6A9 2034 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 A0A0B4J2E0 115 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 A0A1B0GX12 115 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 IQCJ-SCHIP1C9J366 451 aaPredicted RBP18.39■□□□□ 0.53
CLN3-250ENST00000636839 HPP00738 406 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 FBXO45P0C2W1 286 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 LIFP15018 202 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 MST1P26927 711 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 TOMM34Q15785 309 aaPredicted RBP18.39■□□□□ 0.53
CLN3-250ENST00000636839 ZNF468Q5VIY5 522 aaPredicted RBP18.39■□□□□ 0.53
CLN3-250ENST00000636839 UGT2A3Q6UWM9 527 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 USP51Q70EK9 711 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 GRIP2Q9C0E4 1043 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 GPN2Q9H9Y4 310 aaPredicted RBP18.39■□□□□ 0.53
CLN3-250ENST00000636839 CNIH4Q9P003 139 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 AASSQ9UDR5 926 aa18.39■□□□□ 0.53
CLN3-250ENST00000636839 LOC100130705A0A1B0GUX0 176 aa18.38■□□□□ 0.53
CLN3-250ENST00000636839 KPNA4O00629 521 aaPredicted RBP18.38■□□□□ 0.53
CLN3-250ENST00000636839 SOX14O95416 240 aa18.38■□□□□ 0.53
CLN3-250ENST00000636839 NGFRP08138 427 aa18.38■□□□□ 0.53
CLN3-250ENST00000636839 LINGO3P0C6S8 592 aa18.38■□□□□ 0.53
CLN3-250ENST00000636839 LCN1P31025 176 aa18.38■□□□□ 0.53
CLN3-250ENST00000636839 IDH2P48735 452 aaKnown RBP18.38■□□□□ 0.53
CLN3-250ENST00000636839 NPRL3Q12980 569 aa18.38■□□□□ 0.53
CLN3-250ENST00000636839 IL20RBQ6UXL0 311 aa18.38■□□□□ 0.53
CLN3-250ENST00000636839 RPS19BP1Q86WX3 136 aaKnown RBP18.38■□□□□ 0.53
CLN3-250ENST00000636839 NRMQ8IXM6 262 aa18.38■□□□□ 0.53
CLN3-250ENST00000636839 PFN4Q8NHR9 129 aa18.38■□□□□ 0.53
CLN3-250ENST00000636839 FAM46AQ96IP4 442 aaKnown RBP18.38■□□□□ 0.53
CLN3-250ENST00000636839 RDH12Q96NR8 316 aa18.38■□□□□ 0.53
CLN3-250ENST00000636839 EXPH5Q8NEV8 1989 aa18.38■□□□□ 0.53
CLN3-250ENST00000636839 ARRDC5A6NEK1 342 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 H0YAE9 185 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 SPINK2P20155 84 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 UGT2B15P54855 530 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 INPP5JQ15735 1006 aaPredicted RBP18.37■□□□□ 0.53
CLN3-250ENST00000636839 ZNF791Q3KP31 576 aaPredicted RBP18.37■□□□□ 0.53
CLN3-250ENST00000636839 LSMEM1Q8N8F7 131 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 SLC22A8Q8TCC7 542 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 BRIX1Q8TDN6 353 aaKnown RBP18.37■□□□□ 0.53
CLN3-250ENST00000636839 ACOT11Q8WXI4 607 aaPredicted RBP18.37■□□□□ 0.53
CLN3-250ENST00000636839 UBE2FQ969M7 185 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 SPACA9Q96E40 222 aaPredicted RBP18.37■□□□□ 0.53
CLN3-250ENST00000636839 ZNF556Q9HAH1 456 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 C20orf141Q9NUB4 165 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 ANKRD10Q9NXR5 420 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 REV1Q9UBZ9 1251 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 ICAM5Q9UMF0 924 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 A0A1W2PQD3 144 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 H3BNH8 94 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 MYF6P23409 242 aa18.37■□□□□ 0.53
CLN3-250ENST00000636839 IFNA8P32881 189 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms