RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ZNF41P51814 821 aaPredicted RBP16.14■□□□□ 0.17
CLN3-247ENST00000636351 TFF3Q07654 80 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 ZNF141Q15928 474 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 NDUFAF6Q330K2 333 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 RUNDC3AQ59EK9 446 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 EMC4Q5J8M3 183 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 RPS26P11Q5JNZ5 115 aaPredicted RBP16.14■□□□□ 0.17
CLN3-247ENST00000636351 GKAP1Q5VSY0 366 aaPredicted RBP16.14■□□□□ 0.17
CLN3-247ENST00000636351 PIGWQ7Z7B1 504 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 LILRB4Q8NHJ6 448 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 B4GALNT2Q8NHY0 566 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 RP9Q8TA86 221 aaKnown RBP16.14■□□□□ 0.17
CLN3-247ENST00000636351 SLC38A5Q8WUX1 472 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 RND1Q92730 232 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 SARAFQ96BY9 339 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 C1GALT1C1Q96EU7 318 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 SFXN2Q96NB2 322 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 SLC39A3Q9BRY0 314 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 SAP130Q9H0E3 1048 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 A4GALTQ9NPC4 353 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 CARD8Q9Y2G2 431 aa16.14■□□□□ 0.17
CLN3-247ENST00000636351 GTF3C1Q12789 2109 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 MTORP42345 2549 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 IGLV3-32A0A0A0MS00 114 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 A0A1B0GVC2 190 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 OR14I1A6ND48 311 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 B4DXG7 233 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 BCKDKO14874 412 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 SHOX2O60902 331 aaPredicted RBP16.13■□□□□ 0.17
CLN3-247ENST00000636351 DCTN3O75935 186 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 TOXO94900 526 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 FAM107AO95990 144 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 CSTAP01040 98 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 GUSBP08236 651 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 ENDOUP21128 410 aaKnown RBP16.13■□□□□ 0.17
CLN3-247ENST00000636351 MSX1P28360 303 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 ZNF117Q03924 483 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 SELPLGQ14242 412 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 WLSQ5T9L3 541 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 EIF3MQ7L2H7 374 aaKnown RBP16.13■□□□□ 0.17
CLN3-247ENST00000636351 TREML1Q86YW5 311 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 CCDC71Q8IV32 467 aaPredicted RBP16.13■□□□□ 0.17
CLN3-247ENST00000636351 PEX5LQ8IYB4 626 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 OR5M9Q8NGP3 310 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 NFKBIDQ8NI38 313 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 LRRC58Q96CX6 371 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 MYLK2Q9H1R3 596 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 KCNJ16Q9NPI9 418 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 KCNE5Q9UJ90 142 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 VDAC3Q9Y277 283 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 L3MBTL1Q9Y468 752 aa16.13■□□□□ 0.17
CLN3-247ENST00000636351 AIM2O14862 343 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 OIP5O43482 229 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 TFPTP0C1Z6 253 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 UBTFL6P0CB48 400 aaPredicted RBP16.12■□□□□ 0.17
CLN3-247ENST00000636351 ARAFP10398 606 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 BMP2P12643 396 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 NUP107P57740 925 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 PMPCAQ10713 525 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 MAPK14Q16539 360 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 C10orf111Q8N326 155 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 BBS10Q8TAM1 723 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 WDR60Q8WVS4 1066 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 OIT3Q8WWZ8 545 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 ABTB1Q969K4 478 aaPredicted RBP16.12■□□□□ 0.17
CLN3-247ENST00000636351 CMTM5Q96DZ9 223 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 LRRC37BQ96QE4 947 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 SH3GL1Q99961 368 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 MTHFD2LQ9H903 347 aaPredicted RBP16.12■□□□□ 0.17
CLN3-247ENST00000636351 ST6GALNAC1Q9NSC7 600 aaPredicted RBP16.12■□□□□ 0.17
CLN3-247ENST00000636351 ALKBH4Q9NXW9 302 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 SLC35A3Q9Y2D2 325 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 GMEB1Q9Y692 573 aa16.12■□□□□ 0.17
CLN3-247ENST00000636351 FXYD1O00168 92 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 ZNF264O43296 627 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 DBIP07108 87 aaKnown RBP16.11■□□□□ 0.17
CLN3-247ENST00000636351 IL7RP16871 459 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 GPX2P18283 190 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 NUDT2P50583 147 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 P2RX1P51575 399 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 CDK6Q00534 326 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 SCARB2Q14108 478 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 FGFBP1Q14512 234 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 LIN52Q52LA3 116 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 ZNF585AQ6P3V2 769 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 AAGABQ6PD74 315 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 ARSKQ6UWY0 536 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 TMEM200AQ86VY9 491 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 DMRTC2Q8IXT2 367 aaPredicted RBP16.11■□□□□ 0.17
CLN3-247ENST00000636351 CCDC197Q8NCU1 140 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 TOR1AIP2Q8NFQ8 470 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 OR5M1Q8NGP8 315 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 ZG16BQ96DA0 208 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 PNPLA3Q9NST1 481 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 ANGPT4Q9Y264 503 aa16.11■□□□□ 0.17
CLN3-247ENST00000636351 MED12Q93074 2177 aa16.1■□□□□ 0.17
CLN3-247ENST00000636351 A0A087WZY1 265 aa16.1■□□□□ 0.17
CLN3-247ENST00000636351 A0A0G2JPF8 293 aa16.1■□□□□ 0.17
CLN3-247ENST00000636351 AGAP5A6NIR3 686 aa16.1■□□□□ 0.17
CLN3-247ENST00000636351 CLDN24A6NM45 220 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms