RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 LINGO3P0C6S8 592 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 BMP2P12643 396 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 COX4I1P13073 169 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 GPX2P18283 190 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 RPS4Y1P22090 263 aaKnown RBP12.19□□□□□ -0.46
LINC00540-202ENST00000616974 GZMMP51124 257 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 DSCR4P56555 118 aaPredicted RBP12.19□□□□□ -0.46
LINC00540-202ENST00000616974 FGFBP1Q14512 234 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 MRPL2Q5T653 305 aaKnown RBP12.19□□□□□ -0.46
LINC00540-202ENST00000616974 LRRC74BQ6ZQY2 392 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 CCDC71Q8IV32 467 aaPredicted RBP12.19□□□□□ -0.46
LINC00540-202ENST00000616974 TMCO5AQ8N6Q1 288 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 B4GALNT2Q8NHY0 566 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 ABTB1Q969K4 478 aaPredicted RBP12.19□□□□□ -0.46
LINC00540-202ENST00000616974 LRRC58Q96CX6 371 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 RNF145Q96MT1 663 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 DMRTA2Q96SC8 542 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 KAT8Q9H7Z6 458 aaKnown RBP12.19□□□□□ -0.46
LINC00540-202ENST00000616974 QPCTLQ9NXS2 382 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 P2RX2Q9UBL9 471 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 CAMK2AQ9UQM7 478 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 SLC5A6Q9Y289 635 aa12.19□□□□□ -0.46
LINC00540-202ENST00000616974 SEC14L5O43304 696 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 CLDN1O95832 211 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 NUDT14O95848 222 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 CSTAP01040 98 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 OPN1SWP03999 348 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 UBL4AP11441 157 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 KLK2P20151 261 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 AGFG1P52594 562 aaKnown RBP12.18□□□□□ -0.46
LINC00540-202ENST00000616974 KCNJ10P78508 379 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 CYLC2Q14093 348 aaPredicted RBP12.18□□□□□ -0.46
LINC00540-202ENST00000616974 TMEM44Q2T9K0 475 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 TRMT5Q32P41 509 aaKnown RBP12.18□□□□□ -0.46
LINC00540-202ENST00000616974 POMZP3Q6PJE2 187 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 ULK2Q8IYT8 1036 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 FAM71CQ8NEG0 241 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 GPR119Q8TDV5 335 aa12.18□□□□□ -0.46
LINC00540-202ENST00000616974 ZNF845Q96IR2 970 aaPredicted RBP12.18□□□□□ -0.46
LINC00540-202ENST00000616974 THUMPD3Q9BV44 507 aaKnown RBP12.18□□□□□ -0.46
LINC00540-202ENST00000616974 DNAJB12Q9NXW2 375 aaKnown RBP12.18□□□□□ -0.46
LINC00540-202ENST00000616974 WIPF3A6NGB9 483 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 GTPBP1O00178 669 aaKnown RBP12.17□□□□□ -0.46
LINC00540-202ENST00000616974 PRRG2O14669 202 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 ZNF264O43296 627 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 SHOX2O60902 331 aaPredicted RBP12.17□□□□□ -0.46
LINC00540-202ENST00000616974 PGM3O95394 542 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 ARAFP10398 606 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 SLC6A2P23975 617 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 HPCAP84074 193 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 PMPCAQ10713 525 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 MMEL1Q495T6 779 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 AP1ARQ63HQ0 302 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 TUBA1CQ9BQE3 449 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 ARL8BQ9NVJ2 186 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 TMEM45AQ9NWC5 275 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 AK1P00568 194 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 NUP107P57740 925 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 RBPJQ06330 500 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 DMTNQ08495 405 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 NHSL2Q5HYW2 709 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 GGNQ86UU5 652 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 ZZZ3Q8IYH5 903 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 ZNF527Q8NB42 609 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 ATP6V1C2Q8NEY4 427 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 OR52P1PQ8NH57 321 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 ITLN2Q8WWU7 325 aaPredicted RBP12.17□□□□□ -0.46
LINC00540-202ENST00000616974 PRDM14Q9GZV8 571 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 A4GALTQ9NPC4 353 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 CMTM6Q9NX76 183 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 CELSR1Q9NYQ6 3014 aa12.17□□□□□ -0.46
LINC00540-202ENST00000616974 AGR2O95994 175 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 IL7RP16871 459 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 ZNF708P17019 499 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 PRKCAP17252 672 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 ACVR2AP27037 513 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 CLK3P49761 638 aaKnown RBP12.16□□□□□ -0.46
LINC00540-202ENST00000616974 P2RX1P51575 399 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 EEF1A1P68104 462 aaKnown RBP12.16□□□□□ -0.46
LINC00540-202ENST00000616974 CDK6Q00534 326 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 FADDQ13158 208 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 SCARB2Q14108 478 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 ACSF3Q4G176 576 aaPredicted RBP12.16□□□□□ -0.46
LINC00540-202ENST00000616974 GCNT6Q5T4J0 391 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 LIX1LQ8IVB5 337 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 FITM2Q8N6M3 262 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 SMYD1Q8NB12 490 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 TNIP2Q8NFZ5 429 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 OR10Q1Q8NGQ4 319 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 TSPEARQ8WU66 669 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 TTYH2Q9BSA4 534 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 SDHAF3Q9NRP4 125 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 LIPT1Q9Y234 373 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 GMEB1Q9Y692 573 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 CCDC168Q8NDH2 2452 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 TGM6O95932 706 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 GLI4P10075 376 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 PTNP21246 168 aa12.16□□□□□ -0.46
LINC00540-202ENST00000616974 GRNP28799 593 aaKnown RBP12.16□□□□□ -0.46
LINC00540-202ENST00000616974 SFTPDP35247 375 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms