RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PLPPR5Q32ZL2 321 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 GRAMD1BQ3KR37 738 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 ZNF678Q5SXM1 525 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 OR7E24Q6IFN5 339 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 FAM180BQ6P0A1 224 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 C22orf34Q6ZV56 151 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 R3HCC1LQ7Z5L2 792 aaKnown RBP5.59□□□□□ -1.51
CUX1-220ENST00000607092 GALNT5Q7Z7M9 940 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 ALDH16A1Q8IZ83 802 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 NATD1Q8N6N6 113 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 COX18Q8N8Q8 333 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 TOR1AIP2Q8NFQ8 470 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 OR10H5Q8NGA6 315 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 OR5M1Q8NGP8 315 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 B4GALNT2Q8NHY0 566 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 CDC26Q8NHZ8 85 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 RAB3IL1Q8TBN0 382 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 SLC9A6Q92581 669 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 MTERF3Q96E29 417 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 ZHX1-C8orf76Q96EF9 292 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 MRGPRX4Q96LA9 322 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 MS4A4EQ96PG1 132 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 ACPTQ9BZG2 426 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 FKRPQ9H9S5 495 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 BCO1Q9HAY6 547 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 MOV10Q9HCE1 1003 aaKnown RBP5.59□□□□□ -1.51
CUX1-220ENST00000607092 MYOZ1Q9NP98 299 aaPredicted RBP5.59□□□□□ -1.51
CUX1-220ENST00000607092 SERINC1Q9NRX5 453 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 CBLN4Q9NTU7 201 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 POU2F3Q9UKI9 436 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 KCNS2Q9ULS6 477 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 FKBP7Q9Y680 259 aa5.59□□□□□ -1.51
CUX1-220ENST00000607092 HEATR5AQ86XA9 2040 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 A0A087WUV0 522 aaPredicted RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 A0A0J9YW62 118 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 FAM234BA2RU67 622 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 OR5H1A6NKK0 313 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 ZNF724A8MTY0 619 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 GTPBP1O00178 669 aaKnown RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 ZNF195O14628 629 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 ABCD4O14678 606 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 DNPH1O43598 174 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 EIF4E2O60573 245 aaKnown RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 LMX1BO60663 402 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 TBX19O60806 448 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 OXSR1O95747 527 aaPredicted RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 ADAP00813 363 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 GSTA1P08263 222 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 NEFHP12036 1026 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 H2AFXP16104 143 aaPredicted RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 ENPP1P22413 925 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 USF1P22415 310 aaPredicted RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 PSMA4P25789 261 aaKnown RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 ASMTP46597 345 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 P2RX1P51575 399 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 EFNA4P52798 201 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 PRKAA2P54646 552 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 RAE1P78406 368 aaKnown RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 TGFBR3Q03167 851 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 SELENBP1Q13228 472 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 STK11Q15831 433 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 PGGHGQ32M88 737 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 TEX35Q5T0J7 233 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 FAM71E1Q6IPT2 247 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 FAM166AQ6J272 317 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 MFSD12Q6NUT3 480 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 NOXRED1Q6NXP6 359 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 C8orf74Q6P047 294 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 C3orf33Q6P1S2 294 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 BHLHB9Q6PI77 547 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 SLC22A25Q6T423 547 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 LRIG3Q6UXM1 1119 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 Q6ZSR9 355 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 TRIM46Q7Z4K8 759 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 TUSC5Q8IXB3 177 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 ZNF100Q8IYN0 542 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 PLD6Q8N2A8 252 aaKnown RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 MUC15Q8N387 334 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 C17orf78Q8N4C9 275 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 MAPK1IP1LQ8NDC0 245 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 NUP43Q8NFH3 380 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 LILRB1Q8NHL6 650 aaPredicted RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.58□□□□□ -1.52
CUX1-220ENST00000607092 ACMSDQ8TDX5 336 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 ZFP90Q8TF47 636 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 ABHD3Q8WU67 409 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 SLC25A43Q8WUT9 341 aaPredicted RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 OIT3Q8WWZ8 545 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 FAM168AQ92567 244 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 HOXB13Q92826 284 aaPredicted RBP5.58□□□□□ -1.52
CUX1-220ENST00000607092 MOAP1Q96BY2 351 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 ITPKCQ96DU7 683 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 L3HYPDHQ96EM0 354 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 HBEGFQ99075 208 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 STACQ99469 402 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 PAFAH2Q99487 392 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 DHRS9Q9BPW9 319 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 GLIPR2Q9H4G4 154 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 ANKRA2Q9H9E1 313 aa5.58□□□□□ -1.52
CUX1-220ENST00000607092 EQTNQ9NQ60 294 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms