RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 AHRRA9YTQ3 701 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 ANGPT2O15123 496 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 GABRA1P14867 456 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 PRKCAP17252 672 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 PER3P56645 1201 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 BCL2A1Q16548 175 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 SLC25A53Q5H9E4 307 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 RAET1LQ5VY80 246 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 REP15Q6BDI9 236 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 MTFR2Q6P444 385 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 AAGABQ6PD74 315 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 POMZP3Q6PJE2 187 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 B3GNT6Q6ZMB0 384 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 PIGWQ7Z7B1 504 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 MRGPRGQ86SM5 289 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 GGNQ86UU5 652 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 LSRQ86X29 649 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 SNX32Q86XE0 403 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 PM20D2Q8IYS1 436 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 ZNF614Q8N883 585 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 OR5W2Q8NH69 310 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 ZPLD1Q8TCW7 415 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 ADGRG7Q96K78 797 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 MTHFD2LQ9H903 347 aaPredicted RBP17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 MRGBPQ9NV56 204 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 DNAJB12Q9NXW2 375 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 CAMK2AQ9UQM7 478 aa17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 INTS1Q8N201 2190 aaKnown RBP17.6■□□□□ 0.41
SHKBP1-221ENST00000599833 A0A0G2JNJ9 132 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 H3BNH8 94 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 EPPINO95925 133 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 CSTAP01040 98 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 HOXD4P09016 255 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 ESRRAP11474 423 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 AGAP20933 346 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 PPIBP23284 216 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 PTGER4P35408 488 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 CLDN20P56880 219 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 MTPNP58546 118 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 EEF1A1P68104 462 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 KCNJ10P78508 379 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 PMPCAQ10713 525 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 FOXF1Q12946 379 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 CAPRIN1Q14444 709 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 CTU2Q2VPK5 515 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 PRAMEF8Q5VWM4 474 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 PRAMEF7Q5VXH5 474 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 NSUN5P2Q63ZY6 315 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 PLXDC2Q6UX71 529 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 EIF3MQ7L2H7 374 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 NET1Q7Z628 596 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 ZNF808Q8N4W9 903 aaPredicted RBP17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 NAXEQ8NCW5 288 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 TOR1AIP2Q8NFQ8 470 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 CNOT9Q92600 299 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 ZBTB8AQ96BR9 441 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 DTNBP1Q96EV8 351 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 RNF145Q96MT1 663 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 PIGQQ9BRB3 760 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 SLC39A3Q9BRY0 314 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 RAD21L1Q9H4I0 556 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 TMEM38AQ9H6F2 299 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 EXOSC3Q9NQT5 275 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 THUMPD1Q9NXG2 353 aaKnown RBP17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 CLCF1Q9UBD9 225 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 Q9UFV3 132 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 SLC35A3Q9Y2D2 325 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 CAPN7Q9Y6W3 813 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 UNC79Q9P2D8 2635 aa17.59■□□□□ 0.41
SHKBP1-221ENST00000599833 LOC100653049A0A140TA62 436 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 CD8B2A6NJW9 211 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 LINC01387J3KSC0 135 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 GCM2O75603 506 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 KRT34O76011 436 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 PGM3O95394 542 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 UBTFL6P0CB48 400 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 NID1P14543 1247 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 SHC1P29353 583 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 CEACAM8P31997 349 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 CRISP3P54108 245 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 NFYCQ13952 458 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 TRMT5Q32P41 509 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 ENPP6Q6UWR7 440 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 ZNF836Q6ZNA1 936 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 MTDHQ86UE4 582 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 COMTD1Q86VU5 262 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 VRK2Q86Y07 508 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 THUMPD3Q9BV44 507 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 KAT8Q9H7Z6 458 aaKnown RBP17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 RNF6Q9Y252 685 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 HCFC1P51610 2035 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 FBN2P35556 2912 aa17.58■□□□□ 0.4
SHKBP1-221ENST00000599833 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 A0A0G2JPF8 293 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 CDHR4A6H8M9 788 aa17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 MBD3L4A6NDZ8 208 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 MBD3L3A6NE82 208 aaPredicted RBP17.57■□□□□ 0.4
SHKBP1-221ENST00000599833 MBD3L5A6NJ08 208 aaPredicted RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms