RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 CDH13P55290 713 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 RAC3P60763 192 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 CHRNEQ04844 493 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 RASA2Q15283 850 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 CARTPTQ16568 116 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 TSNAXIP1Q2TAA8 658 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 TMEM176BQ3YBM2 270 aaPredicted RBP8.91□□□□□ -0.98
TRIM28-210ENST00000597618 FAM174BQ3ZCQ3 159 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 IQCCQ4KMZ1 466 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 GALNT5Q7Z7M9 940 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 CREG2Q8IUH2 290 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 ZNF100Q8IYN0 542 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 PLD6Q8N2A8 252 aaKnown RBP8.91□□□□□ -0.98
TRIM28-210ENST00000597618 ZNF433Q8N7K0 673 aaPredicted RBP8.91□□□□□ -0.98
TRIM28-210ENST00000597618 CDRT4Q8N9R6 151 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 ZNF540Q8NDQ6 660 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 OR6Y1Q8NGX8 325 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 OR52N5Q8NH56 324 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 CDC26Q8NHZ8 85 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 FBXO27Q8NI29 283 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 APIPQ96GX9 242 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 C1QTNF3Q9BXJ4 246 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 DPH5Q9H2P9 285 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 GLIPR2Q9H4G4 154 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 FKRPQ9H9S5 495 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 UBQLN4Q9NRR5 601 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 NTMQ9P121 344 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 RNF14Q9UBS8 474 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 ZNF225Q9UK10 706 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 ING1Q9UK53 422 aaPredicted RBP8.91□□□□□ -0.98
TRIM28-210ENST00000597618 SLC25A15Q9Y619 301 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 GPC6Q9Y625 555 aaPredicted RBP8.91□□□□□ -0.98
TRIM28-210ENST00000597618 ATP23Q9Y6H3 246 aa8.91□□□□□ -0.98
TRIM28-210ENST00000597618 A0A0A6YYJ9 748 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 CIB4A0PJX0 185 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 SLCO1B7G3V0H7 640 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 M0R1B8 84 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 CYTIPO60759 359 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 NUDT14O95848 222 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 PRPS2P11908 318 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 EDNRAP25101 427 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 MAP3K8P41279 467 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 MAGEA4P43358 317 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 COMPP49747 757 aaPredicted RBP8.9□□□□□ -0.98
TRIM28-210ENST00000597618 SUMO3P55854 103 aaPredicted RBP8.9□□□□□ -0.98
TRIM28-210ENST00000597618 ACTG1P63261 375 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 PHC1P78364 1004 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 CLCQ05315 142 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 C2orf80Q0P641 193 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 RASGEF1BQ0VAM2 473 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 SELENBP1Q13228 472 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 CD226Q15762 336 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 UAP1Q16222 522 aaPredicted RBP8.9□□□□□ -0.98
TRIM28-210ENST00000597618 PRSS53Q2L4Q9 553 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 FAM219BQ5XKK7 198 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 FBXW9Q5XUX1 488 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 C3orf56Q8N813 242 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.9□□□□□ -0.98
TRIM28-210ENST00000597618 HOXB13Q92826 284 aaPredicted RBP8.9□□□□□ -0.98
TRIM28-210ENST00000597618 MRRFQ96E11 262 aaKnown RBP8.9□□□□□ -0.98
TRIM28-210ENST00000597618 FOXN4Q96NZ1 517 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 ZNF300Q96RE9 604 aaPredicted RBP8.9□□□□□ -0.98
TRIM28-210ENST00000597618 KLHDC3Q9BQ90 382 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 MRPL57Q9BQC6 102 aaKnown RBP8.9□□□□□ -0.98
TRIM28-210ENST00000597618 ERP44Q9BS26 406 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 BHLHE41Q9C0J9 482 aaPredicted RBP8.9□□□□□ -0.98
TRIM28-210ENST00000597618 MRPL46Q9H2W6 279 aaKnown RBP8.9□□□□□ -0.98
TRIM28-210ENST00000597618 SIRT5Q9NXA8 310 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 EMC3Q9P0I2 261 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 TMEFF2Q9UIK5 374 aaPredicted RBP8.9□□□□□ -0.98
TRIM28-210ENST00000597618 ACTL7BQ9Y614 415 aa8.9□□□□□ -0.98
TRIM28-210ENST00000597618 CCDC151A5D8V7 595 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 FAM187AA6NFU0 413 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 CCT8L1PA6NM43 557 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 A8MT66 165 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 C9JVG2 144 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 EFNA2O43921 213 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 KCNK2O95069 426 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 HSPA4LO95757 839 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 PCMT1P22061 227 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 HMOX2P30519 316 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 HSD17B3P37058 310 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 PAFAH1B1P43034 410 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 SERPINB4P48594 390 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 SNRPD2P62316 118 aaKnown RBP8.89□□□□□ -0.99
TRIM28-210ENST00000597618 MRPS25P82663 173 aaKnown RBP8.89□□□□□ -0.99
TRIM28-210ENST00000597618 ZNF117Q03924 483 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 OR7E24Q6IFN5 339 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 FAM71E1Q6IPT2 247 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 GPRIN3Q6ZVF9 776 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 IKBIPQ70UQ0 350 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 MTERF4Q7Z6M4 381 aaKnown RBP8.89□□□□□ -0.99
TRIM28-210ENST00000597618 ZAR1Q86SH2 424 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 UBE2J2Q8N2K1 259 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 ATP6V1C2Q8NEY4 427 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 SEMA6DQ8NFY4 1073 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 CEP70Q8NHQ1 597 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 FBXO30Q8TB52 745 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 METTL6Q8TCB7 284 aa8.89□□□□□ -0.99
TRIM28-210ENST00000597618 ZNF75CPQ92670 426 aaPredicted RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms