RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 MBD3L2Q8NHZ7 208 aaPredicted RBP10.05□□□□□ -0.8
VRK3-210ENST00000596121 SLC38A5Q8WUX1 472 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 FIG4Q92562 907 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 CNOT9Q92600 299 aaKnown RBP10.05□□□□□ -0.8
VRK3-210ENST00000596121 MAL2Q969L2 176 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 ZNF845Q96IR2 970 aaPredicted RBP10.05□□□□□ -0.8
VRK3-210ENST00000596121 RNF145Q96MT1 663 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 UCN2Q96RP3 112 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 PIGQQ9BRB3 760 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 TRIM8Q9BZR9 551 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 LAT2Q9GZY6 243 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 CALHM2Q9HA72 323 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 NPDC1Q9NQX5 325 aaPredicted RBP10.05□□□□□ -0.8
VRK3-210ENST00000596121 SAR1AQ9NR31 198 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 CLCF1Q9UBD9 225 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 LIPT1Q9Y234 373 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 CHST2Q9Y4C5 530 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 NOTCH2Q04721 2471 aa10.05□□□□□ -0.8
VRK3-210ENST00000596121 ITPR2Q14571 2701 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 A0A087WZY1 265 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 C7orf72A4D263 438 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 AGAP5A6NIR3 686 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 FAM90A27PA6NNH2 459 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 H3BML4 177 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 FBP2O00757 339 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 ZNF264O43296 627 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 SEC14L5O43304 696 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 EIF4E2O60573 245 aaKnown RBP10.04□□□□□ -0.8
VRK3-210ENST00000596121 NR2F1P10589 423 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 UBL4AP11441 157 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 BMP2P12643 396 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 PEPDP12955 493 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 PRKCAP17252 672 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 POU3F2P20265 443 aaPredicted RBP10.04□□□□□ -0.8
VRK3-210ENST00000596121 RPS4Y1P22090 263 aaKnown RBP10.04□□□□□ -0.8
VRK3-210ENST00000596121 GCKP35557 465 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 TIMP3P35625 211 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 ARFIP2P53365 341 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 DSTNP60981 165 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 IRX1P78414 480 aaPredicted RBP10.04□□□□□ -0.8
VRK3-210ENST00000596121 FOXF1Q12946 379 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 SELPLGQ14242 412 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 CTU2Q2VPK5 515 aaKnown RBP10.04□□□□□ -0.8
VRK3-210ENST00000596121 METTL21CQ5VZV1 264 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 LACC1Q8IV20 430 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 ACBD4Q8NC06 268 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 RELL2Q8NC24 303 aaPredicted RBP10.04□□□□□ -0.8
VRK3-210ENST00000596121 OR5W2Q8NH69 310 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 FBXO27Q8NI29 283 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 CA5BP1Q8WTZ4 195 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 C10orf82Q8WW14 230 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 ASB5Q8WWX0 329 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 ZBTB8AQ96BR9 441 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 ADGRG7Q96K78 797 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 THUMPD3Q9BV44 507 aaKnown RBP10.04□□□□□ -0.8
VRK3-210ENST00000596121 TMEM185BQ9H7F4 350 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 MTHFD2LQ9H903 347 aaPredicted RBP10.04□□□□□ -0.8
VRK3-210ENST00000596121 POLE3Q9NRF9 147 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 COQ3Q9NZJ6 369 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 GMEB1Q9Y692 573 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 AP4B1Q9Y6B7 739 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 DOCK7Q96N67 2140 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 DSPPQ9NZW4 1301 aa10.04□□□□□ -0.8
VRK3-210ENST00000596121 MED12LQ86YW9 2145 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 A0A0J9YW62 118 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 H3BNH8 94 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 LINC01387J3KSC0 135 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 ETV2O00321 342 aaPredicted RBP10.03□□□□□ -0.8
VRK3-210ENST00000596121 CSTAP01040 98 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 BCHEP06276 602 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 UBTFL6P0CB48 400 aaPredicted RBP10.03□□□□□ -0.8
VRK3-210ENST00000596121 TROVE2P10155 538 aaKnown RBP eCLIP10.03□□□□□ -0.8
VRK3-210ENST00000596121 PRF1P14222 555 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 ZNF17P17021 662 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 MAGEA8P43361 318 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 SLC6A8P48029 635 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 ZNF41P51814 821 aaPredicted RBP10.03□□□□□ -0.8
VRK3-210ENST00000596121 SEC24CP53992 1094 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 KCNJ10P78508 379 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 TXNL4AP83876 142 aaKnown RBP10.03□□□□□ -0.8
VRK3-210ENST00000596121 QPRTQ15274 297 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 ADRM1Q16186 407 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 RUNDC3AQ59EK9 446 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 SLC25A53Q5H9E4 307 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 EIF3MQ7L2H7 374 aaKnown RBP10.03□□□□□ -0.8
VRK3-210ENST00000596121 VRK2Q86Y07 508 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 INTS1Q8N201 2190 aaKnown RBP10.03□□□□□ -0.8
VRK3-210ENST00000596121 DPP10Q8N608 796 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 METTL25Q8N6Q8 603 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 SMPDL3BQ92485 455 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 WNT2BQ93097 391 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 TMEM19Q96HH6 336 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 RABEP2Q9H5N1 569 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 A4GALTQ9NPC4 353 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 RLIMQ9NVW2 624 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 KLHL14Q9P2G3 628 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 TRIM33Q9UPN9 1127 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 NDUFAF1Q9Y375 327 aa10.03□□□□□ -0.8
VRK3-210ENST00000596121 FBN2P35556 2912 aa10.02□□□□□ -0.81
VRK3-210ENST00000596121 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms