RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 IRGMA1A4Y4 181 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 UNC119BA6NIH7 251 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 CLDN24A6NM45 220 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 ZAR1LA6NP61 321 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 CDRT15L2A8MXV6 281 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 H3BMH7 237 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 H3BSA7 217 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 M0R3G1 203 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 KLK10O43240 276 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 TLX3O43711 291 aaPredicted RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 XPNPEP2O43895 674 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 ALOX12BO75342 701 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 RCBTB2O95199 551 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 ZIC2O95409 532 aaPredicted RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 EPPINO95925 133 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 HMGN1P05114 100 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 CD63P08962 238 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 CT45A8P0DMV1 189 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 CT45A9P0DMV2 189 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 JUNBP17275 347 aaPredicted RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 EPHA2P29317 976 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 RNF144AP50876 292 aaPredicted RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 CCR4P51679 360 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 GPR143P51810 404 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 NR0B1P51843 470 aaKnown RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 TMPRSS3P57727 454 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 PLCXD2Q0VAA5 305 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 FGFBP1Q14512 234 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 CPEB4Q17RY0 729 aaKnown RBP eCLIP8.56□□□□□ -1.04
SS18-220ENST00000582092 CNPY1Q3B7I2 92 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 CT45A2Q5DJT8 189 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 MEDAGQ5VYS4 303 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 ZNF770Q6IQ21 691 aaPredicted RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 PWWP2BQ6NUJ5 590 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 RPL13AP3Q6NVV1 102 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 SLC27A4Q6P1M0 643 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 NPSR1Q6W5P4 371 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 Q6ZPB1 254 aaPredicted RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 SHISA6Q6ZSJ9 500 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 RASSF6Q6ZTQ3 369 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 AHSA2Q719I0 299 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 PRICKLE2Q7Z3G6 844 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 TMPRSS9Q7Z410 1059 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 ZER1Q7Z7L7 766 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 COMTD1Q86VU5 262 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 GRAMD2AQ8IUY3 354 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 SPARTQ8N0X7 666 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 SHISA5Q8N114 240 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 OR5L2Q8NGL0 311 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 OR8J1Q8NGP2 316 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 OR1N1Q8NGS0 311 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 PHOSPHO1Q8TCT1 267 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 GRHL3Q8TE85 626 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 FBLIM1Q8WUP2 373 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 DNAJA4Q8WW22 397 aaPredicted RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 TMEM239Q8WW34 195 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 CNOT9Q92600 299 aaKnown RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 DIO2Q92813 273 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 MR1Q95460 341 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 EFHD2Q96C19 240 aaPredicted RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 FAM46AQ96IP4 442 aaKnown RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 MPP4Q96JB8 637 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 IL4I1Q96RQ9 567 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 LPAR4Q99677 370 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 CTRCQ99895 268 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 WFDC6Q9BQY6 131 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 TBL1XR1Q9BZK7 514 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 NDEL1Q9GZM8 345 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 ASCL3Q9NQ33 180 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 PLCXD1Q9NUJ7 323 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 WDR70Q9NW82 654 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 CHCHD3Q9NX63 227 aaKnown RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 SLC39A1Q9NY26 324 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 ERVK-18Q9QC07 812 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 CTSFQ9UBX1 484 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 NXT1Q9UKK6 140 aaKnown RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 RPL36Q9Y3U8 105 aaKnown RBP8.56□□□□□ -1.04
SS18-220ENST00000582092 COMMD3-BMI1R4GMX3 469 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 TRIM64A6NGJ6 449 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 TRIM64CA6NLI5 447 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 CLCA1A8K7I4 914 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 ZNF99A8MXY4 864 aaPredicted RBP8.55□□□□□ -1.04
SS18-220ENST00000582092 EFCAB9A8MZ26 197 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 IDSB3KWA1 339 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 TRMUO75648 421 aaKnown RBP8.55□□□□□ -1.04
SS18-220ENST00000582092 UTS2O95399 124 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 NUDT14O95848 222 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 SAGP10523 405 aaPredicted RBP8.55□□□□□ -1.04
SS18-220ENST00000582092 UBL4AP11441 157 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 FGF5P12034 268 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 IFI30P13284 250 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 GSTT1P30711 240 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 SLC5A2P31639 672 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 SOX18P35713 384 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 GCGRP47871 477 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 GIPRP48546 466 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 ST13P50502 369 aaKnown RBP8.55□□□□□ -1.04
SS18-220ENST00000582092 RAB15P59190 212 aa8.55□□□□□ -1.04
SS18-220ENST00000582092 SNRPGP62308 76 aaKnown RBP8.55□□□□□ -1.04
SS18-220ENST00000582092 PMS2P3Q13401 168 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms