RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 TMEM255BQ8WV15 326 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 OIT3Q8WWZ8 545 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 SLC35B4Q969S0 331 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 TP53INP1Q96A56 240 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 FAM46AQ96IP4 442 aaKnown RBP9.66□□□□□ -0.86
SS18-217ENST00000580958 PHOX2BQ99453 314 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 GPA33Q99795 319 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 YTHDF1Q9BYJ9 559 aaKnown RBP9.66□□□□□ -0.86
SS18-217ENST00000580958 TRIM2Q9C040 744 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 RNF6Q9Y252 685 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 PCDHGA6Q9Y5G7 932 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 HSPE1-MOB4S4R3N1 261 aa9.66□□□□□ -0.86
SS18-217ENST00000580958 SPEGQ15772 3267 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 A0A0B4J2E0 115 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 A0A1B0GX12 115 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 ZAR1LA6NP61 321 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 C9orf172C9J069 976 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 KLF7O75840 302 aaPredicted RBP9.65□□□□□ -0.86
SS18-217ENST00000580958 NADKO95544 446 aaPredicted RBP9.65□□□□□ -0.86
SS18-217ENST00000580958 UBL4AP11441 157 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 HPGDP15428 266 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 FMO3P31513 532 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 ADH7P40394 386 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 NBL1P41271 181 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 GPR4P46093 362 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 OMPP47874 163 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 GTF2A1P52655 376 aaPredicted RBP9.65□□□□□ -0.86
SS18-217ENST00000580958 PNLIPRP2P54317 469 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 NRG3P56975 720 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 ALDH6A1Q02252 535 aaKnown RBP9.65□□□□□ -0.86
SS18-217ENST00000580958 TOP3AQ13472 1001 aaPredicted RBP9.65□□□□□ -0.86
SS18-217ENST00000580958 PTGES3Q15185 160 aaKnown RBP9.65□□□□□ -0.86
SS18-217ENST00000580958 CD226Q15762 336 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 C3orf38Q5JPI3 329 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 RBM48Q5RL73 367 aaKnown RBP9.65□□□□□ -0.86
SS18-217ENST00000580958 TMEM236Q5W0B7 351 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 ZNF613Q6PF04 617 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 KIRREL2Q6UWL6 708 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 CD300LDQ6UXZ3 194 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 GLRX5Q86SX6 157 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 KIF18BQ86Y91 864 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 ZNF440Q8IYI8 595 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 CADM2Q8N3J6 435 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 TMCO5AQ8N6Q1 288 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 FAM71CQ8NEG0 241 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 TOR1AIP2Q8NFQ8 470 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 OR2Y1Q8NGV0 311 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 WDR36Q8NI36 951 aaKnown RBP9.65□□□□□ -0.86
SS18-217ENST00000580958 FAM81AQ8TBF8 368 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 UBE2FQ969M7 185 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 ZNF700Q9H0M5 742 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 ADNPQ9H2P0 1102 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 POLR1BQ9H9Y6 1135 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 ZNF226Q9NYT6 803 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 CNIH4Q9P003 139 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 FOXJ2Q9P0K8 574 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 RPS6KB2Q9UBS0 482 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 PADI1Q9ULC6 663 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 CARD8Q9Y2G2 431 aa9.65□□□□□ -0.86
SS18-217ENST00000580958 AHCTF1Q8WYP5 2266 aa9.65□□□□□ -0.87
SS18-217ENST00000580958 PCSK5Q92824 1860 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 A0A087WXM4 84 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 SPAARA0A1B0GVQ0 90 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 TRIM64A6NGJ6 449 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 OR6C70A6NIJ9 312 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 TMEM200CA6NKL6 621 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 H3BN98 237 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 M0R129 80 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 GTPBP1O00178 669 aaKnown RBP9.64□□□□□ -0.87
SS18-217ENST00000580958 WWP2O00308 870 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 SLC1A7O00341 560 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 ZNF264O43296 627 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 CHP2O43745 196 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 ZNF354AO60765 605 aaPredicted RBP9.64□□□□□ -0.87
SS18-217ENST00000580958 PPM1BO75688 479 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 ZFAND5O76080 213 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 ANGPTL1O95841 491 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 CLPTM1O96005 669 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 IGHEP01854 428 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 NGFRP08138 427 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 CELA2AP08217 269 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 COX6A1P12074 109 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 TCN2P20062 427 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 GSTM3P21266 225 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 IDH2P48735 452 aaKnown RBP9.64□□□□□ -0.87
SS18-217ENST00000580958 HLCSP50747 726 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 CCR4P51679 360 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 RPS18P62269 152 aaKnown RBP9.64□□□□□ -0.87
SS18-217ENST00000580958 PSPHP78330 225 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 COX10Q12887 443 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 TSPAN31Q12999 210 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 SKP2Q13309 424 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 EIF3IQ13347 325 aaKnown RBP9.64□□□□□ -0.87
SS18-217ENST00000580958 EFR3AQ14156 821 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 SLX4IPQ5VYV7 408 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 MARCH3Q86UD3 253 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 ENTHD1Q8IYW4 607 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 POGLUT1Q8NBL1 392 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 OR5L2Q8NGL0 311 aa9.64□□□□□ -0.87
SS18-217ENST00000580958 OR8K3Q8NH51 312 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms