RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 CDX2Q99626 313 aaPredicted RBP12.96□□□□□ -0.33
VPS33B-208ENST00000574755 DHCR7Q9UBM7 475 aaKnown RBP12.96□□□□□ -0.33
VPS33B-208ENST00000574755 GMEB2Q9UKD1 530 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 STUB1Q9UNE7 303 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 COLQQ9Y215 455 aaPredicted RBP12.96□□□□□ -0.33
VPS33B-208ENST00000574755 EXOSC1Q9Y3B2 195 aaKnown RBP12.96□□□□□ -0.33
VPS33B-208ENST00000574755 A3GALT2U3KPV4 340 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 UNC13CQ8NB66 2214 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 TMEM129A0AVI4 362 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 K7ESF4 209 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 SULT1C4O75897 302 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 RCBTB2O95199 551 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 FOSL2P15408 326 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 GLB1P16278 677 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 TBXA2RP21731 343 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 S100A5P33763 92 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 ATP6V1E1P36543 226 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 ATP12AP54707 1039 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 DMWDQ09019 674 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 RPL13AP3Q6NVV1 102 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 DCDC5Q6ZRR9 648 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 SNX29P2Q8IUI4 249 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 CPOQ8IVL8 374 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 CENPSQ8N2Z9 138 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 CADM2Q8N3J6 435 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 SLC25A45Q8N413 288 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 OR13C2Q8NGS9 318 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 GATAD2BQ8WXI9 593 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 CLIP3Q96DZ5 547 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 TRIM2Q9C040 744 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 HINT3Q9NQE9 182 aaKnown RBP12.96□□□□□ -0.33
VPS33B-208ENST00000574755 PNO1Q9NRX1 252 aaKnown RBP12.96□□□□□ -0.33
VPS33B-208ENST00000574755 ETAA1Q9NY74 926 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 PRODH2Q9UF12 536 aa12.96□□□□□ -0.33
VPS33B-208ENST00000574755 SPIN1Q9Y657 262 aaPredicted RBP12.96□□□□□ -0.33
VPS33B-208ENST00000574755 ASXL3Q9C0F0 2248 aa12.96□□□□□ -0.34
VPS33B-208ENST00000574755 PNMA8CA0A1B0GUJ8 204 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 A8MU76 341 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 H3BMH7 237 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 RFPL3O75679 317 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 TSPAN19P0C672 248 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 OCM2P0CE71 109 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 OCMP0CE72 109 aaPredicted RBP12.95□□□□□ -0.34
VPS33B-208ENST00000574755 MYF5P13349 255 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 CRYBB2P43320 205 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 PSMD4P55036 377 aaKnown RBP12.95□□□□□ -0.34
VPS33B-208ENST00000574755 SLC35F1Q5T1Q4 408 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 GDPGP1Q6ZNW5 385 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 CXXC5Q7LFL8 322 aaKnown RBP12.95□□□□□ -0.34
VPS33B-208ENST00000574755 ZNF550Q7Z398 422 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 LSMEM1Q8N8F7 131 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 OR4F15Q8NGB8 312 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 OR4C3Q8NH37 302 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 CHPT1Q8WUD6 406 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.95□□□□□ -0.34
VPS33B-208ENST00000574755 NXF2Q9GZY0 626 aaKnown RBP12.95□□□□□ -0.34
VPS33B-208ENST00000574755 ENKD1Q9H0I2 346 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 DUSP15Q9H1R2 295 aaPredicted RBP12.95□□□□□ -0.34
VPS33B-208ENST00000574755 LANCL2Q9NS86 450 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 SIGLEC7Q9Y286 467 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 SIT1Q9Y3P8 196 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 TRAV27A0A087WT01 109 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.95□□□□□ -0.34
VPS33B-208ENST00000574755 A0A1W2PPC1 479 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 NPIPB9F8W1W9 429 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 BHLHE40O14503 412 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 HYAL3O43820 417 aaPredicted RBP12.95□□□□□ -0.34
VPS33B-208ENST00000574755 CSTAP01040 98 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 CPEP16870 476 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 HTR1FP30939 366 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 GALNSP34059 522 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 CTBP2P56545 445 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 CFHR1Q03591 330 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 BIKQ13323 160 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 PRAMEF17Q5VTA0 474 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 PLBD1Q6P4A8 553 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 Q7L0L9 218 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 LHFPL3Q86UP9 236 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 GPR135Q8IZ08 494 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 OR51A7Q8NH64 312 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 NACC2Q96BF6 587 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 COX4I2Q96KJ9 171 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 IFT27Q9BW83 186 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 ASPNQ9BXN1 380 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 RPS6KB2Q9UBS0 482 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 SSR3Q9UNL2 185 aa12.95□□□□□ -0.34
VPS33B-208ENST00000574755 SOCS6O14544 535 aa12.94□□□□□ -0.34
VPS33B-208ENST00000574755 PRKNO60260 465 aaPredicted RBP12.94□□□□□ -0.34
VPS33B-208ENST00000574755 CLPSP04118 112 aa12.94□□□□□ -0.34
VPS33B-208ENST00000574755 LIMS3P0CW19 117 aa12.94□□□□□ -0.34
VPS33B-208ENST00000574755 LIMS4P0CW20 117 aa12.94□□□□□ -0.34
VPS33B-208ENST00000574755 CSF2RBP32927 897 aa12.94□□□□□ -0.34
VPS33B-208ENST00000574755 SLC1A3P43003 542 aa12.94□□□□□ -0.34
VPS33B-208ENST00000574755 RAB15P59190 212 aa12.94□□□□□ -0.34
VPS33B-208ENST00000574755 ZSWIM7Q19AV6 140 aa12.94□□□□□ -0.34
VPS33B-208ENST00000574755 NDUFAF6Q330K2 333 aa12.94□□□□□ -0.34
VPS33B-208ENST00000574755 PERM1Q5SV97 790 aa12.94□□□□□ -0.34
VPS33B-208ENST00000574755 THSD4Q6ZMP0 1018 aa12.94□□□□□ -0.34
VPS33B-208ENST00000574755 LAPTM4BQ86VI4 370 aa12.94□□□□□ -0.34
VPS33B-208ENST00000574755 GATAD2AQ86YP4 633 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms