RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 PRKCAP17252 672 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 AGTR1P30556 359 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 RPL3P39023 403 aaKnown RBP16.15■□□□□ 0.18
CHD3-214ENST00000572579 CASP9P55211 416 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 TMEM176BQ3YBM2 270 aaPredicted RBP16.15■□□□□ 0.18
CHD3-214ENST00000572579 OR4F3Q6IEY1 312 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 EMBQ6PCB8 327 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 MTERF4Q7Z6M4 381 aaKnown RBP16.15■□□□□ 0.18
CHD3-214ENST00000572579 NUDCD3Q8IVD9 361 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 SFXN5Q8TD22 340 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 RNF128Q8TEB7 428 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 ASIC5Q9NY37 505 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 MCTS1Q9ULC4 181 aaKnown RBP16.15■□□□□ 0.18
CHD3-214ENST00000572579 FAF1Q9UNN5 650 aaPredicted RBP16.15■□□□□ 0.18
CHD3-214ENST00000572579 EMC9Q9Y3B6 208 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 DTNAQ9Y4J8 743 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 ACTL7BQ9Y614 415 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 ARID1AO14497 2285 aa16.15■□□□□ 0.18
CHD3-214ENST00000572579 ETV2O00321 342 aaPredicted RBP16.14■□□□□ 0.17
CHD3-214ENST00000572579 ANKRD28O15084 1053 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 DNAJA2O60884 412 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 TUBBP07437 444 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 ENPP1P22413 925 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 EDNRAP25101 427 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 P2RX1P51575 399 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 TSC22D1Q15714 1073 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 CHI3L2Q15782 390 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 PDCD2Q16342 344 aaPredicted RBP16.14■□□□□ 0.17
CHD3-214ENST00000572579 MAPK14Q16539 360 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 ZNF239Q16600 458 aaKnown RBP16.14■□□□□ 0.17
CHD3-214ENST00000572579 PGS1Q32NB8 556 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 LSM12Q3MHD2 195 aaKnown RBP16.14■□□□□ 0.17
CHD3-214ENST00000572579 SPDYE7PQ495Y7 208 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 TNFAIP8L3Q5GJ75 292 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 C6orf120Q7Z4R8 191 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 HOMEZQ8IX15 550 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 TUSC5Q8IXB3 177 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 MREGQ8N565 214 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 PIP5K1AQ99755 562 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 HOXD1Q9GZZ0 328 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 C12orf49Q9H741 205 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 UBTD1Q9HAC8 227 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 ATAD3AQ9NVI7 634 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 PAQR5Q9NXK6 330 aaPredicted RBP16.14■□□□□ 0.17
CHD3-214ENST00000572579 STOML1Q9UBI4 398 aa16.14■□□□□ 0.17
CHD3-214ENST00000572579 ANK3Q12955 4377 aaKnown RBP16.14■□□□□ 0.17
CHD3-214ENST00000572579 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.13■□□□□ 0.17
CHD3-214ENST00000572579 CFLARO15519 480 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 GCM2O75603 506 aaPredicted RBP16.13■□□□□ 0.17
CHD3-214ENST00000572579 SYNGR4O95473 234 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 PLGP00747 810 aaPredicted RBP16.13■□□□□ 0.17
CHD3-214ENST00000572579 SERPINE1P05121 402 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 ATP6V1C1P21283 382 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 ADH6P28332 368 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 EIF1P41567 113 aaKnown RBP16.13■□□□□ 0.17
CHD3-214ENST00000572579 CTBP2P56545 445 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 ABCE1P61221 599 aaKnown RBP16.13■□□□□ 0.17
CHD3-214ENST00000572579 SLC25A53Q5H9E4 307 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 PDZK1Q5T2W1 519 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 GABRG1Q8N1C3 465 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 NATD1Q8N6N6 113 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 ATP6V1C2Q8NEY4 427 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 ZG16BQ96DA0 208 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 C18orf12Q96KH6 178 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 PRPF18Q99633 342 aaKnown RBP16.13■□□□□ 0.17
CHD3-214ENST00000572579 HHATLQ9HCP6 504 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 GLRX2Q9NS18 164 aa16.13■□□□□ 0.17
CHD3-214ENST00000572579 FN1P02751 2386 aaKnown RBP16.13■□□□□ 0.17
CHD3-214ENST00000572579 PRAMEF27A3QJZ7 478 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 ZNF814B7Z6K7 855 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 DDX5P17844 614 aaKnown RBP16.12■□□□□ 0.17
CHD3-214ENST00000572579 MATN1P21941 496 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 ELK4P28324 431 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 PLAURQ03405 335 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 SKP2Q13309 424 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 QPRTQ15274 297 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 ZNF141Q15928 474 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 Q5PR19 223 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 SHEQ5VZ18 495 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 TFAP2EQ6VUC0 442 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 ATG4DQ86TL0 474 aaPredicted RBP16.12■□□□□ 0.17
CHD3-214ENST00000572579 ANKRD46Q86W74 232 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 OR5W2Q8NH69 310 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 TEX37Q96LM6 180 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 TMEM204Q9BSN7 226 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 PARD6BQ9BYG5 372 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 ACTR6Q9GZN1 396 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 NMUR2Q9GZQ4 415 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 QRSL1Q9H0R6 528 aaKnown RBP16.12■□□□□ 0.17
CHD3-214ENST00000572579 NOP53Q9NZM5 478 aaKnown RBP16.12■□□□□ 0.17
CHD3-214ENST00000572579 GPC6Q9Y625 555 aaPredicted RBP16.12■□□□□ 0.17
CHD3-214ENST00000572579 ZANQ9Y493 2812 aa16.12■□□□□ 0.17
CHD3-214ENST00000572579 IGHV3-15A0A0B4J1V0 119 aa16.11■□□□□ 0.17
CHD3-214ENST00000572579 A0A1W2PNR3 127 aa16.11■□□□□ 0.17
CHD3-214ENST00000572579 SERINC4A6NH21 518 aa16.11■□□□□ 0.17
CHD3-214ENST00000572579 GTPBP1O00178 669 aaKnown RBP16.11■□□□□ 0.17
CHD3-214ENST00000572579 RNASET2O00584 256 aaKnown RBP16.11■□□□□ 0.17
CHD3-214ENST00000572579 SMPD2O60906 423 aa16.11■□□□□ 0.17
CHD3-214ENST00000572579 UGT2B17O75795 530 aa16.11■□□□□ 0.17
CHD3-214ENST00000572579 H6PDO95479 791 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms