RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 EXOSC3Q9NQT5 275 aaKnown RBP10.13□□□□□ -0.79
CLK3-226ENST00000569406 SMCO4Q9NRQ5 59 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 TXNL4BQ9NX01 149 aaKnown RBP10.13□□□□□ -0.79
CLK3-226ENST00000569406 ASF1AQ9Y294 204 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 hCG_1809904A0A1W2PP81 198 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 A0A1W2PR64 198 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 A0A1W2PRV1 198 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 A6NJY4 79 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 A6NLC8 198 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 AZIN1O14977 448 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 PRAMEF11O60813 436 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 PIAS2O75928 621 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 CRHP06850 196 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 EBLN1P0CF75 366 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 UBCP0CG48 685 aaKnown RBP10.13□□□□□ -0.79
CLK3-226ENST00000569406 ITPKAP23677 461 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 BDKRB1P46663 353 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 SPIN4Q56A73 249 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 C3orf38Q5JPI3 329 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 VITQ6UXI7 678 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 C9orf43Q8TAL5 461 aaPredicted RBP10.13□□□□□ -0.79
CLK3-226ENST00000569406 ACOT12Q8WYK0 555 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 HIST1H2BAQ96A08 127 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 TWSG1Q9GZX9 223 aa10.13□□□□□ -0.79
CLK3-226ENST00000569406 MOXD2PA6NHM9 499 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 PRRT4C9JH25 899 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 EEDO75530 441 aaKnown RBP10.12□□□□□ -0.79
CLK3-226ENST00000569406 PLGP00747 810 aaPredicted RBP10.12□□□□□ -0.79
CLK3-226ENST00000569406 IL1AP01583 271 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 INHAP05111 366 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 CR2P20023 1033 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 HTR2AP28223 471 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 AVPR2P30518 371 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 RENBPP51606 427 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 NDUFA6P56556 154 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 PSMA6P60900 246 aaKnown RBP10.12□□□□□ -0.79
CLK3-226ENST00000569406 HECTD2Q5U5R9 776 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 OR2T5Q6IEZ7 315 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 LYPD4Q6UWN0 246 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 FGD2Q7Z6J4 655 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 CBARPQ8N350 705 aaPredicted RBP10.12□□□□□ -0.79
CLK3-226ENST00000569406 CLDN22Q8N7P3 220 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 OR2T29Q8NH02 315 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 ISOC2Q96AB3 205 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 R3HDM4Q96D70 268 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 KCTD7Q96MP8 289 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 ZNF583Q96ND8 569 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 NSUN5Q96P11 429 aaKnown RBP10.12□□□□□ -0.79
CLK3-226ENST00000569406 NSUN3Q9H649 340 aaKnown RBP10.12□□□□□ -0.79
CLK3-226ENST00000569406 CLEC2DQ9UHP7 191 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 ELOVL7A1L3X0 281 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 HYKKA2RU49 373 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 PCCBP05166 539 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 LINC00614P0C842 121 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 FOLR2P14207 255 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 FDXRP22570 491 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 CALCRP30988 508 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 STAT5AP42229 794 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 EVX1P49640 407 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 RING1Q06587 406 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 UBXN2BQ14CS0 331 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 SPHARQ15513 63 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 TSNQ15631 228 aaKnown RBP10.12□□□□□ -0.79
CLK3-226ENST00000569406 MARC1Q5VT66 337 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 CASP12Q6UXS9 341 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 TMIGD1Q6UXZ0 262 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 CAMKMTQ7Z624 323 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 PXKQ7Z7A4 578 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 LRRC28Q86X40 367 aaPredicted RBP10.12□□□□□ -0.79
CLK3-226ENST00000569406 PHYKPLQ8IUZ5 450 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 PHACTR4Q8IZ21 702 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 MAML2Q8IZL2 1156 aaPredicted RBP10.12□□□□□ -0.79
CLK3-226ENST00000569406 CFAP52Q8N1V2 620 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 FAM46DQ8NEK8 389 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 OR1S2Q8NGQ3 325 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 RNASE8Q8TDE3 154 aaKnown RBP10.12□□□□□ -0.79
CLK3-226ENST00000569406 DUSP19Q8WTR2 217 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 TMEM161AQ9NX61 479 aa10.12□□□□□ -0.79
CLK3-226ENST00000569406 DENND4CQ5VZ89 1909 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 A0A087X1B8 175 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 FMO6PO60774 539 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 SCG5P05408 212 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 GSTP1P09211 210 aaKnown RBP10.11□□□□□ -0.79
CLK3-226ENST00000569406 DRD2P14416 443 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 FOXA1P55317 472 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 RBX1P62877 108 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 ZXDBP98169 803 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 RCAN2Q14206 197 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 DPPA4Q7L190 304 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 TAF8Q7Z7C8 310 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 RASGEF1AQ8N9B8 481 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 OR13C4Q8NGS5 318 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 SLC52A3Q9NQ40 469 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 MARCH2Q9P0N8 246 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 GALPQ9UBC7 116 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 PPIL1Q9Y3C6 166 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 A0A1W2PRB8 838 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 RNF13O43567 381 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 MATN4O95460 622 aa10.11□□□□□ -0.79
CLK3-226ENST00000569406 GLP2RO95838 553 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms