RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 ZNF45Q02386 682 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 DBPQ10586 325 aaPredicted RBP18.72■□□□□ 0.59
CLN3-230ENST00000568076 FUT7Q11130 342 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 KCNAB1Q14722 419 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 ZNF141Q15928 474 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 SLC35F1Q5T1Q4 408 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 B3GLCTQ6Y288 498 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 CCDC190Q86UF4 302 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 LNX2Q8N448 690 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 ZNF426Q9BUY5 554 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 PCED1AQ9H1Q7 454 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 ABCB10Q9NRK6 738 aa18.72■□□□□ 0.59
CLN3-230ENST00000568076 MRPS17Q9Y2R5 130 aaKnown RBP18.72■□□□□ 0.59
CLN3-230ENST00000568076 FITM1A5D6W6 292 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 ZNF749O43361 778 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 TBX1O43435 398 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 PRAMEF2O60811 474 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 CLPSP04118 112 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 ETV6P41212 452 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 TGM4P49221 684 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 CSNK1EP49674 416 aaKnown RBP18.71■□□□□ 0.59
CLN3-230ENST00000568076 HNRNPKP61978 463 aaKnown RBP eCLIP18.71■□□□□ 0.59
CLN3-230ENST00000568076 C14orf28Q4W4Y0 310 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 PLBD1Q6P4A8 553 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 SMARCD3Q6STE5 483 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 SIRT6Q8N6T7 355 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 FAM83FQ8NEG4 500 aaPredicted RBP18.71■□□□□ 0.59
CLN3-230ENST00000568076 OR52L1Q8NGH7 329 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 HCAR1Q9BXC0 346 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 OR10A5Q9H207 317 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 EVA1AQ9H8M9 152 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 MED20Q9H944 212 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 SNTG1Q9NSN8 517 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 LRIT1Q9P2V4 623 aa18.71■□□□□ 0.59
CLN3-230ENST00000568076 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.7■□□□□ 0.58
CLN3-230ENST00000568076 ZC3H12DA2A288 527 aaKnown RBP18.7■□□□□ 0.58
CLN3-230ENST00000568076 HNRNPCP07910 306 aaKnown RBP eCLIP18.7■□□□□ 0.58
CLN3-230ENST00000568076 CD1CP29017 333 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 HSD17B7P56937 341 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 STARD6P59095 220 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 DSG2Q14126 1118 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 FGFBP1Q14512 234 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 PLK5Q496M5 336 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 C22orf42Q6IC83 251 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 SLC22A16Q86VW1 577 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 ZNF615Q8N8J6 731 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 ZFP41Q8N8Y5 198 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 MINDY2Q8NBR6 621 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 OTULINQ96BN8 352 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 Q9N2J8 555 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 TMEM5Q9Y2B1 443 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 RNF215Q9Y6U7 377 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 MAU2Q9Y6X3 613 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 CACNA1IQ9P0X4 2223 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 ABCA7Q8IZY2 2146 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 TRAV27A0A087WT01 109 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 SAGE2PA6NJ88 616 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 J3QRE1 110 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 PTP4A3O75365 173 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 SAGP10523 405 aaPredicted RBP18.7■□□□□ 0.58
CLN3-230ENST00000568076 BMP7P18075 431 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 GTF2E2P29084 291 aaKnown RBP18.7■□□□□ 0.58
CLN3-230ENST00000568076 TCTE1Q5JU00 501 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 STEAP3Q658P3 488 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 NIPAL3Q6P499 406 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 BMP8AQ7Z5Y6 402 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 CDK20Q8IZL9 346 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 LSMEM1Q8N8F7 131 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 ZSCAN1Q8NBB4 408 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 UFD1Q92890 307 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 TM9SF2Q99805 663 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 RERGLQ9H628 205 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 SIAEQ9HAT2 523 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 SMURF1Q9HCE7 757 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 ST6GALNAC1Q9NSC7 600 aaPredicted RBP18.7■□□□□ 0.58
CLN3-230ENST00000568076 ERVK13-1Q9NX77 482 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 H2AFY2Q9P0M6 372 aaPredicted RBP18.7■□□□□ 0.58
CLN3-230ENST00000568076 EPHA6Q9UF33 1036 aa18.7■□□□□ 0.58
CLN3-230ENST00000568076 SYNDIG1LA6NDD5 238 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 H3BMH7 237 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 RCBTB2O95199 551 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 MSL3P1P0C860 447 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 BCKDHBP21953 392 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 RORCP51449 518 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 FOXK2Q01167 660 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 ZNF181Q2M3W8 571 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 NDUFAF6Q330K2 333 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 BCORP1Q8N888 145 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 OR4C3Q8NH37 302 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 OR51A7Q8NH64 312 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 SECISBP2Q96T21 854 aaKnown RBP18.69■□□□□ 0.58
CLN3-230ENST00000568076 CHRNA10Q9GZZ6 450 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 RAB33BQ9H082 229 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 FN3KQ9H479 309 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 TOR4AQ9NXH8 423 aa18.69■□□□□ 0.58
CLN3-230ENST00000568076 CAB39Q9Y376 341 aaPredicted RBP18.69■□□□□ 0.58
CLN3-230ENST00000568076 TMEM265A0A087WTH1 108 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 RHPN2P1A8MT19 583 aa18.68■□□□□ 0.58
CLN3-230ENST00000568076 H0YIG0 161 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms