RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 GPLD1P80108 840 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 BDH1Q02338 343 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 PRDX1Q06830 199 aaKnown RBP12.32□□□□□ -0.44
VPS4A-204ENST00000566354 ZNF791Q3KP31 576 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-204ENST00000566354 BICRALQ6AI39 1079 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 ZNF767PQ75MW2 155 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 CCDC116Q8IYX3 515 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 OR4Q3Q8NH05 313 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 ASB12Q8WXK4 309 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 C16orf58Q96GQ5 468 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 UBL7Q96S82 380 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-204ENST00000566354 APOOQ9BUR5 198 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 SLC38A1Q9H2H9 487 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 MCUBQ9NWR8 336 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 KCNE3Q9Y6H6 103 aa12.32□□□□□ -0.44
VPS4A-204ENST00000566354 DNMT3AQ9Y6K1 912 aaPredicted RBP12.32□□□□□ -0.44
VPS4A-204ENST00000566354 TTC28Q96AY4 2481 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 LAMA1P25391 3075 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 IGHV1OR15-9A0A0B4J2B8 117 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 LOC102723532A0A0G2JNH3 316 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 C2orf92A0A1B0GVN3 265 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 C10orf142B7Z368 130 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 LATO43561 262 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 PRKRAO75569 313 aaKnown RBP12.31□□□□□ -0.44
VPS4A-204ENST00000566354 OR2B3O76000 313 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 SLC35G4P0C7Q5 338 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 ARFIP1P53367 373 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 ZNF57Q68EA5 555 aaPredicted RBP12.31□□□□□ -0.44
VPS4A-204ENST00000566354 VASNQ6EMK4 673 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 ZNF322Q6U7Q0 402 aaPredicted RBP12.31□□□□□ -0.44
VPS4A-204ENST00000566354 TMEM91Q6ZNR0 172 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 LINC01555Q8NAE3 123 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 AKAP1Q92667 903 aaKnown RBP eCLIP12.31□□□□□ -0.448e-8■■■■■ 27.2
VPS4A-204ENST00000566354 SNAPC3Q92966 411 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 CNRIP1Q96F85 164 aaPredicted RBP12.31□□□□□ -0.44
VPS4A-204ENST00000566354 BMFQ96LC9 184 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 OR7D2Q96RA2 312 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 AICDAQ9GZX7 198 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 KLHL28Q9NXS3 571 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 CBLCQ9ULV8 474 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 ENTPD4Q9Y227 616 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 GPR55Q9Y2T6 319 aaPredicted RBP12.31□□□□□ -0.44
VPS4A-204ENST00000566354 A0A1W2PR48 441 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 CD8B2A6NJW9 211 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 SCAMP1O15126 338 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 PGRMC2O15173 223 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 EMC8O43402 210 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 FRS3O43559 492 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 APBB3O95704 486 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 CEACAM5P06731 702 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 ALPPL2P10696 532 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 CD8BP10966 210 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 HNRNPA2B1P22626 353 aaKnown RBP12.31□□□□□ -0.44
VPS4A-204ENST00000566354 MTNR1BP49286 362 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 BTG1P62324 171 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 ZXDAP98168 799 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 PGGHGQ32M88 737 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 CLVS2Q5SYC1 327 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 TMEM107Q6UX40 140 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 VRK2Q86Y07 508 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 KLBQ86Z14 1044 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 ZG16BQ96DA0 208 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 WACQ9BTA9 647 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 NLGN3Q9NZ94 848 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 MBD2Q9UBB5 411 aa12.31□□□□□ -0.44
VPS4A-204ENST00000566354 IGKV1-8A0A0C4DH67 115 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 A0A0G2JMP0 313 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 ECDO95905 644 aaPredicted RBP12.3□□□□□ -0.44
VPS4A-204ENST00000566354 ELK1P19419 428 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 CSNK2A2P19784 350 aaPredicted RBP12.3□□□□□ -0.44
VPS4A-204ENST00000566354 HIST1H1TP22492 207 aaPredicted RBP12.3□□□□□ -0.44
VPS4A-204ENST00000566354 MPIP34949 423 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 TRHRP34981 398 aaPredicted RBP12.3□□□□□ -0.44
VPS4A-204ENST00000566354 PTGER1P34995 402 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 CLCNKAP51800 687 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 ATP12AP54707 1039 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 CSTF1Q05048 431 aaKnown RBP12.3□□□□□ -0.44
VPS4A-204ENST00000566354 INSL4Q14641 139 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 ZIC1Q15915 447 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 BTBD16Q32M84 506 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 KIAA0895LQ68EN5 471 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 MRM1Q6IN84 353 aaKnown RBP12.3□□□□□ -0.44
VPS4A-204ENST00000566354 ZNF620Q6ZNG0 422 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 NKAIN4Q8IVV8 208 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 DEFB119Q8N690 84 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 SLC37A3Q8NCC5 494 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 OR2T33Q8NG76 320 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 HYLS1Q96M11 299 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 MFRPQ9BY79 579 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 KLHL31Q9H511 634 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 FOLH1BQ9HBA9 442 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 PTGFRNQ9P2B2 879 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 EXTL2Q9UBQ6 330 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 ATG4BQ9Y4P1 393 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 SLCO1B1Q9Y6L6 691 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 HEATR5BQ9P2D3 2071 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 VPS13AQ96RL7 3174 aa12.3□□□□□ -0.44
VPS4A-204ENST00000566354 GTPBP1O00178 669 aaKnown RBP12.29□□□□□ -0.44
VPS4A-204ENST00000566354 KLF4O43474 513 aa12.29□□□□□ -0.44
VPS4A-204ENST00000566354 ZNF217O75362 1048 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms