RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 INTS1Q8N201 2190 aaKnown RBP15.64■□□□□ 0.09
CLN3-217ENST00000565354 ACBD4Q8NC06 268 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 FAM57AQ8TBR7 257 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 SLC38A5Q8WUX1 472 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 WDR60Q8WVS4 1066 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 SFXN2Q96NB2 322 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 LRRC37BQ96QE4 947 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 SAP130Q9H0E3 1048 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 ENKD1Q9H0I2 346 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 QRSL1Q9H0R6 528 aaKnown RBP15.64■□□□□ 0.09
CLN3-217ENST00000565354 MYLK2Q9H1R3 596 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 MTHFD2LQ9H903 347 aaPredicted RBP15.64■□□□□ 0.09
CLN3-217ENST00000565354 A4GALTQ9NPC4 353 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 MEMO1Q9Y316 297 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 NCKAP5O14513 1909 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 ACANP16112 2415 aa15.64■□□□□ 0.09
CLN3-217ENST00000565354 IGLV3-32A0A0A0MS00 114 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 A0A0G2JPF8 293 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 HNRNPCL2B2RXH8 293 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 HNRNPCL3B7ZW38 293 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 ADAM10O14672 748 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 AIM2O14862 343 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 ZNF264O43296 627 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 HNRNPCL1O60812 293 aaKnown RBP15.63■□□□□ 0.09
CLN3-217ENST00000565354 DBIP07108 87 aaKnown RBP15.63■□□□□ 0.09
CLN3-217ENST00000565354 TFPTP0C1Z6 253 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 HNRNPCL4P0DMR1 293 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 BMP2P12643 396 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 GPX2P18283 190 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 P2RX1P51575 399 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 ZNF117Q03924 483 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 FGFBP1Q14512 234 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 RPS26P11Q5JNZ5 115 aaPredicted RBP15.63■□□□□ 0.09
CLN3-217ENST00000565354 AAGABQ6PD74 315 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 METTL25Q8N6Q8 603 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 CCDC197Q8NCU1 140 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 TOR1AIP2Q8NFQ8 470 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 OR5M9Q8NGP3 310 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 NFKBIDQ8NI38 313 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 BBS10Q8TAM1 723 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 PMM1Q92871 262 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 ABTB1Q969K4 478 aaPredicted RBP15.63■□□□□ 0.09
CLN3-217ENST00000565354 MAL2Q969L2 176 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 LRRC58Q96CX6 371 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 C1GALT1C1Q96EU7 318 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 IKZF5Q9H5V7 419 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 EFCAB1Q9HAE3 211 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 ALKBH4Q9NXW9 302 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 SPRR3Q9UBC9 169 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 TNFRSF10DQ9UBN6 386 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 VDAC3Q9Y277 283 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 SLC35A3Q9Y2D2 325 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 MRPS18CQ9Y3D5 142 aaKnown RBP15.63■□□□□ 0.09
CLN3-217ENST00000565354 GMEB1Q9Y692 573 aa15.63■□□□□ 0.09
CLN3-217ENST00000565354 A0A087WZY1 265 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 CENPVL1A0A0U1RR11 272 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 EIF4E2O60573 245 aaKnown RBP15.62■□□□□ 0.09
CLN3-217ENST00000565354 UBTFL6P0CB48 400 aaPredicted RBP15.62■□□□□ 0.09
CLN3-217ENST00000565354 ARAFP10398 606 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 SLC6A2P23975 617 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 SUMO3P55854 103 aaPredicted RBP15.62■□□□□ 0.09
CLN3-217ENST00000565354 CDK6Q00534 326 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 SCARB2Q14108 478 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 SELPLGQ14242 412 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 MAPK14Q16539 360 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 NDUFAF6Q330K2 333 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 NANOGP8Q6NSW7 305 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 ZNF585AQ6P3V2 769 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 ENPP6Q6UWR7 440 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 MEX3BQ6ZN04 569 aaKnown RBP15.62■□□□□ 0.09
CLN3-217ENST00000565354 FGD2Q7Z6J4 655 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 TREML1Q86YW5 311 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 ANKS4BQ8N8V4 417 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 OR52P1PQ8NH57 321 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 TREX2Q9BQ50 279 aaPredicted RBP15.62■□□□□ 0.09
CLN3-217ENST00000565354 ECSITQ9BQ95 431 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 PIGQQ9BRB3 760 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 SLC39A3Q9BRY0 314 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 NANOGQ9H9S0 305 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 KCNE5Q9UJ90 142 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 ZNF232Q9UNY5 417 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 CAMK2AQ9UQM7 478 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 ANGPT4Q9Y264 503 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 L3MBTL1Q9Y468 752 aa15.62■□□□□ 0.09
CLN3-217ENST00000565354 AGAP5A6NIR3 686 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 FIGNL2A6NMB9 653 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 NDUFAB1O14561 156 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 ACTL6AO96019 429 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 PRDX6P30041 224 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 NUDT2P50583 147 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 KCNJ10P78508 379 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 CBFBQ13951 182 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 LARS2Q15031 903 aaKnown RBP15.61■□□□□ 0.09
CLN3-217ENST00000565354 GXYLT1Q4G148 440 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 LIN52Q52LA3 116 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 PRAMEF8Q5VWM4 474 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 PRAMEF7Q5VXH5 474 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 REEP3Q6NUK4 255 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 CBLN3Q6UW01 205 aa15.61■□□□□ 0.09
CLN3-217ENST00000565354 ARSKQ6UWY0 536 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms