RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 C4orf33Q8N1A6 199 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 OR7A2PQ8NGA2 310 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 CPNE4Q96A23 557 aaPredicted RBP14.99□□□□□ -0.01
CLN3-211ENST00000564091 STACQ99469 402 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 PIGUQ9H490 435 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 COQ10BQ9H8M1 238 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 DUSP22Q9NRW4 184 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 ICAM5Q9UMF0 924 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 TMED5Q9Y3A6 229 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 MAGED1Q9Y5V3 778 aaPredicted RBP14.99□□□□□ -0.01
CLN3-211ENST00000564091 KCNE3Q9Y6H6 103 aa14.99□□□□□ -0.01
CLN3-211ENST00000564091 IGHV3-15A0A0B4J1V0 119 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 ZNF814B7Z6K7 855 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 CRLF1O75462 422 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 PRKD3O94806 890 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 CHRNGP07510 517 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 DANCRP0C864 163 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 LAMP1P11279 417 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 KRT4P19013 534 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 ATP6V1C1P21283 382 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 ELK4P28324 431 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 ADH6P28332 368 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 ASMTP46597 345 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 KLHL26Q53HC5 615 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.98□□□□□ -0.01
CLN3-211ENST00000564091 CXXC5Q7LFL8 322 aaKnown RBP14.98□□□□□ -0.01
CLN3-211ENST00000564091 R3HCC1LQ7Z5L2 792 aaKnown RBP14.98□□□□□ -0.01
CLN3-211ENST00000564091 BANPQ8N9N5 519 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 SMAP2Q8WU79 429 aaPredicted RBP14.98□□□□□ -0.01
CLN3-211ENST00000564091 HSD17B8Q92506 261 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 KISS1RQ969F8 398 aaPredicted RBP14.98□□□□□ -0.01
CLN3-211ENST00000564091 FBXW5Q969U6 566 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 GTPBP3Q969Y2 492 aaKnown RBP14.98□□□□□ -0.01
CLN3-211ENST00000564091 MTERF3Q96E29 417 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 ESRP2Q9H6T0 727 aaKnown RBP14.98□□□□□ -0.01
CLN3-211ENST00000564091 ATP6V1HQ9UI12 483 aa14.98□□□□□ -0.01
CLN3-211ENST00000564091 A0A1W2PNR3 127 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 GJE1A6NN92 205 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 C9JVG2 144 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 GTPBP1O00178 669 aaKnown RBP14.97□□□□□ -0.01
CLN3-211ENST00000564091 PIP5K1BO14986 540 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 SCAMP2O15127 329 aaKnown RBP14.97□□□□□ -0.01
CLN3-211ENST00000564091 HSPA4LO95757 839 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 CHEK2O96017 543 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 YES1P07947 543 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 P2RX1P51575 399 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 TP53BP2Q13625 1128 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 PCLAFQ15004 111 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 MLC1Q15049 377 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 UGT3A2Q3SY77 523 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 CDC73Q6P1J9 531 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 RNF165Q6ZSG1 346 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 MTERF4Q7Z6M4 381 aaKnown RBP14.97□□□□□ -0.01
CLN3-211ENST00000564091 CNPY4Q8N129 248 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 KBTBD8Q8NFY9 601 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 RFWD2Q8NHY2 731 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 GPR119Q8TDV5 335 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 ADAMTS15Q8TE58 950 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 TWIST2Q8WVJ9 160 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 ZNF775Q96BV0 537 aaPredicted RBP14.97□□□□□ -0.01
CLN3-211ENST00000564091 TRMT61AQ96FX7 289 aaKnown RBP14.97□□□□□ -0.01
CLN3-211ENST00000564091 ACTRT3Q9BYD9 372 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 REG4Q9BYZ8 158 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 CXorf36Q9H7Y0 433 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 ANKZF1Q9H8Y5 726 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 ING1Q9UK53 422 aaPredicted RBP14.97□□□□□ -0.01
CLN3-211ENST00000564091 LIPT1Q9Y234 373 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 TRAF6Q9Y4K3 522 aa14.97□□□□□ -0.01
CLN3-211ENST00000564091 GPC6Q9Y625 555 aaPredicted RBP14.97□□□□□ -0.01
CLN3-211ENST00000564091 RAI1Q7Z5J4 1906 aaPredicted RBP14.96□□□□□ -0.01
CLN3-211ENST00000564091 DPRXA6NFQ7 191 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 H3BNH8 94 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 TRIM13O60858 407 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 NDUFS7O75251 213 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 PRKCAP17252 672 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 EDNRAP25101 427 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 IDUAP35475 653 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 ACVR1BP36896 505 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 HPCAL1P37235 193 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 CCT3P49368 545 aaKnown RBP14.96□□□□□ -0.01
CLN3-211ENST00000564091 BSPH1Q075Z2 132 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 DMTNQ08495 405 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 FAPQ12884 760 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 ITGADQ13349 1161 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 SPDYE7PQ495Y7 208 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 ZNF672Q499Z4 452 aaPredicted RBP14.96□□□□□ -0.01
CLN3-211ENST00000564091 DCST2Q5T1A1 773 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 HEPHL1Q6MZM0 1159 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 SEZ6L2Q6UXD5 910 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 TDRPQ86YL5 185 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 ZNF614Q8N883 585 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 ZNF527Q8NB42 609 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 EPS8L3Q8TE67 593 aaKnown RBP14.96□□□□□ -0.01
CLN3-211ENST00000564091 ZFP90Q8TF47 636 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 UBLCP1Q8WVY7 318 aaPredicted RBP14.96□□□□□ -0.01
CLN3-211ENST00000564091 OR5P2Q8WZ92 322 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 TRMOQ9BU70 441 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 HOXD1Q9GZZ0 328 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 GP6Q9HCN6 339 aa14.96□□□□□ -0.01
CLN3-211ENST00000564091 NGBQ9NPG2 151 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms