RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ZNF546Q86UE3 836 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 DCUN1D3Q8IWE4 304 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 ZBTB8OSQ8IWT0 167 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 HS3ST5Q8IZT8 346 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 LGI2Q8N0V4 545 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 C4orf33Q8N1A6 199 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 PARP8Q8N3A8 854 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 EMC1Q8N766 993 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 HSD17B11Q8NBQ5 300 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 PROKR2Q8NFJ6 384 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 OR4C5Q8NGB2 326 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 UBTD2Q8WUN7 234 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 ERGIC1Q969X5 290 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 C12orf43Q96C57 262 aaKnown RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 FBXO17Q96EF6 278 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 P2RY11Q96G91 374 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 SMIM10Q96HG1 83 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 PGAM5Q96HS1 289 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 C14orf144Q96I85 54 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 AKR1E2Q96JD6 320 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 LINC00615Q96LM1 132 aaPredicted RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 PAFAH2Q99487 392 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 DCUN1D5Q9BTE7 237 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 FUCA2Q9BTY2 467 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 ACTR6Q9GZN1 396 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 ZNF334Q9HCZ1 680 aaPredicted RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 HMG20AQ9NP66 347 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 OR2S2Q9NQN1 319 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 FAM207AQ9NSI2 230 aaPredicted RBP4.69□□□□□ -1.66
VPS35-205ENST00000563984 ABHD10Q9NUJ1 306 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 SLC2A8Q9NY64 477 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 RDH8Q9NYR8 311 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 BFARQ9NZS9 450 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 IFNKQ9P0W0 207 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 RHCGQ9UBD6 479 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 UBQLN2Q9UHD9 624 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 NFU1Q9UMS0 254 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 KCNJ14Q9UNX9 436 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 GSTK1Q9Y2Q3 226 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.69□□□□□ -1.66
VPS35-205ENST00000563984 ZNF337Q9Y3M9 751 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 KLK4Q9Y5K2 254 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 SPATA31A5Q5VU36 1347 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 SPATA31A7Q8IWB4 1347 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 GOLGA3Q08378 1498 aa4.69□□□□□ -1.66
VPS35-205ENST00000563984 TOP2BQ02880 1626 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 TBC1D3KA0A087X1G2 549 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 TMEM213A2RRL7 107 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SIGLEC16A6NMB1 481 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 YDJCA8MPS7 323 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CENPXA8MT69 81 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 A8MZ25 164 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 LEUTXA8MZ59 168 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 C9JVG2 144 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 RNASEK-C17orf49H0YIS7 233 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 H3BN98 237 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 MKRN2OSH3BPM6 223 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 K7EP13 123 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SGK494L7N484 410 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 M0R296 226 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 DFFAO00273 331 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 PDHXO00330 501 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 PEX12O00623 359 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 INPP4BO15327 924 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 EMC8O43402 210 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 DNPH1O43598 174 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SPRY1O43609 319 aaPredicted RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 CSO75390 466 aaKnown RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 B3GAT3O94766 335 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SUPT7LO94864 414 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CTDNEP1O95476 244 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 TDP2O95551 362 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CXCL10P02778 98 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 RPN2P04844 631 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CHRNGP07510 517 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 HOXC4P09017 264 aaPredicted RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 HOXC6P09630 235 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 RD3LP0DJH9 198 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 UCHL3P15374 230 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 ZNF23P17027 643 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 IMPDH1P20839 514 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 MATN1P21941 496 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 ITGA3P26006 1051 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 NDUFS1P28331 727 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CEACAM3P40198 252 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 SERPINB10P48595 397 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 RPL14P50914 215 aaKnown RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 CCR6P51684 374 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 TAS2R39P59534 338 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 DYNLL1P63167 89 aaKnown RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 SRSF1Q07955 248 aaKnown RBP eCLIP4.68□□□□□ -1.66
VPS35-205ENST00000563984 RBBP4Q09028 425 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 PPP1R8Q12972 351 aaKnown RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 MED21Q13503 144 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 RAB31Q13636 194 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 TAF1AQ15573 450 aaPredicted RBP4.68□□□□□ -1.66
VPS35-205ENST00000563984 OR4D1Q15615 310 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 CDNFQ49AH0 187 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 PIGGQ5H8A4 983 aa4.68□□□□□ -1.66
VPS35-205ENST00000563984 C9orf64Q5T6V5 341 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms