RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 NR3C1P04150 777 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 PPIAL4GP0DN37 164 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ATP1B2P14415 290 aaPredicted RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 IL32P24001 234 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 CD40LGP29965 261 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 HTR5AP47898 357 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 TAF6P49848 677 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 VAMP7P51809 220 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 IST1P53990 364 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 HNRNPH2P55795 449 aaKnown RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 BASP1P80723 227 aaKnown RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 CDK16Q00536 496 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SHHQ15465 462 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 TAF13Q15543 124 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SNRNP35Q16560 246 aaKnown RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 MOGAT2Q3SYC2 334 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SHFQ7M4L6 423 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 RD3Q7Z3Z2 195 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ITIH5Q86UX2 942 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 KCNMB4Q86W47 210 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 CACUL1Q86Y37 369 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 DCUN1D3Q8IWE4 304 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 PARP8Q8N3A8 854 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 KLHDC1Q8N7A1 406 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 LMNTD1Q8N9Z9 388 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 NFAM1Q8NET5 270 aaPredicted RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 OR7G1Q8NGA0 311 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 OR5AU1Q8NGC0 362 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 FAM110BQ8TC76 370 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 DNAJC19Q96DA6 116 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 TMEM19Q96HH6 336 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 LURAP1Q96LR2 239 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SLC38A2Q96QD8 506 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 COPS8Q99627 209 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SH2D3AQ9BRG2 576 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 CNPY3Q9BT09 278 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 DPH7Q9BTV6 452 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 MCRIP2Q9BUT9 160 aaKnown RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 DUSP16Q9BY84 665 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 KRTAP4-7Q9BYR0 210 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SLITRK6Q9H5Y7 841 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ZNF665Q9H7R5 613 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 CCNB1IP1Q9NPC3 277 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 C1orf123Q9NWV4 160 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 PSMC3IPQ9P2W1 217 aaPredicted RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 DCDC2Q9UHG0 476 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ATPIF1Q9UII2 106 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 PHF11Q9UIL8 331 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ZNF229Q9UJW7 825 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SCML1Q9UN30 329 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ARL5CA6NH57 179 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 POC1B-GALNT4F8VUJ3 575 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 GOLGA8RI6L899 631 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 MLNRO43193 412 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SULT1B1O43704 296 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ZIC3O60481 467 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SCELO95171 688 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 CHRM5P08912 532 aaPredicted RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 PSMA2P25787 234 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 IL12BP29460 328 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 CDH5P33151 784 aaPredicted RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 MPLP40238 635 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 HERVK_113P63132 956 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SARNPP82979 210 aaKnown RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 TFAMQ00059 246 aaKnown RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 PMS2P3Q13401 168 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ART3Q13508 389 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 FASTKD3Q14CZ7 662 aaKnown RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SLX4IPQ5VYV7 408 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 RNLSQ5VYX0 342 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 KCTD18Q6PI47 426 aaPredicted RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ASCL4Q6XD76 172 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 C17orf107Q6ZR85 190 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 Q75L30 129 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 BHLHA15Q7RTS1 189 aaPredicted RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 PRUNE1Q86TP1 453 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ACOT1Q86TX2 421 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 TMEM139Q8IV31 216 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 CDKL3Q8IVW4 592 aaPredicted RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 MFSD9Q8NBP5 474 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 TMEM104Q8NE00 496 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 FAM76AQ8TAV0 307 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 FUBP1Q96AE4 644 aaKnown RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ZNF514Q96K75 400 aaPredicted RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 C1QTNF7Q9BXJ2 289 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ERVK-6Q9BXR3 956 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 PARD6BQ9BYG5 372 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 TM6SF2Q9BZW4 377 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SEMA4CQ9C0C4 833 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 VN1R1Q9GZP7 353 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 LRRN3Q9H3W5 708 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 GOLPH3Q9H4A6 298 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 TLE6Q9H808 572 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 CSNK1G1Q9HCP0 422 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 SEMA4GQ9NTN9 838 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 TECRQ9NZ01 308 aaKnown RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ADAM22Q9P0K1 906 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 WRAP73Q9P2S5 460 aaPredicted RBP4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 CYTH4Q9UIA0 394 aa4.67□□□□□ -1.66
VPS35P1-201ENST00000563400 ZNF175Q9Y473 711 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms