RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 SLC18A1P54219 525 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 WDR4P57081 412 aaKnown RBP15.11■□□□□ 0.01
CLK3-210ENST00000563112 CARD18P57730 90 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 FOXF1Q12946 379 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 GPR68Q15743 365 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 ARHGAP11BQ3KRB8 267 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.11■□□□□ 0.01
CLK3-210ENST00000563112 ZNF474Q6S9Z5 364 aaPredicted RBP15.11■□□□□ 0.01
CLK3-210ENST00000563112 CBLN3Q6UW01 205 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 ANKRD46Q86W74 232 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 CLEC4FQ8N1N0 589 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 TMCO5AQ8N6Q1 288 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 TOR1AIP2Q8NFQ8 470 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 RFWD2Q8NHY2 731 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 FBXO27Q8NI29 283 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 GPR119Q8TDV5 335 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 OSTF1Q92882 214 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 GMPPAQ96IJ6 420 aaPredicted RBP15.11■□□□□ 0.01
CLK3-210ENST00000563112 ADGRG7Q96K78 797 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 NPAS1Q99742 590 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 FOXC2Q99958 501 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 NMUR2Q9GZQ4 415 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 OR51I1Q9H343 314 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 LIME1Q9H400 295 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 FANCFQ9NPI8 374 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 ZNF226Q9NYT6 803 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 PLEKHA6Q9Y2H5 1048 aa15.11■□□□□ 0.01
CLK3-210ENST00000563112 SERINC4A6NH21 518 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 E9PBE3 544 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 SLCO1B7G3V0H7 640 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 C16orf97H3BN30 126 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 ZNF195O14628 629 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 ANKRD28O15084 1053 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 HDAC3O15379 428 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 OIP5O43482 229 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 SCN2BO60939 215 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 CGAP01215 116 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 UBL4AP11441 157 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 SFTPDP35247 375 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 CHI3L1P36222 383 aaPredicted RBP15.1■□□□□ 0.01
CLK3-210ENST00000563112 SLC6A8P48029 635 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 CCR4P51679 360 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 MAGOHP61326 146 aaKnown RBP15.1■□□□□ 0.01
CLK3-210ENST00000563112 CBFBQ13951 182 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 CASP8Q14790 479 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 GUSBP1Q15486 140 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 CTU2Q2VPK5 515 aaKnown RBP15.1■□□□□ 0.01
CLK3-210ENST00000563112 FAM174BQ3ZCQ3 159 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 SPANXN4Q5MJ08 99 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 PDZK1Q5T2W1 519 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 ZNF610Q8N9Z0 462 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 OR6K3Q8NGY3 331 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 OR5W2Q8NH69 310 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 RAB3IL1Q8TBN0 382 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 MIPOL1Q8TD10 442 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 XAGE5Q8WWM1 108 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 ZBTB18Q99592 522 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 MED18Q9BUE0 208 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 SERHL2Q9H4I8 314 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 TESMINQ9Y4I5 508 aa15.1■□□□□ 0.01
CLK3-210ENST00000563112 MED13LQ71F56 2210 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 SDHDO14521 159 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 FCMRO60667 390 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 SS18L1O75177 396 aaPredicted RBP15.09■□□□□ 0.01
CLK3-210ENST00000563112 CYP7B1O75881 506 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 HRGP04196 525 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 OR12D1P0DN82 309 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 UGT2B10P36537 528 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 KHKP50053 298 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 CASP9P55211 416 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 NME5P56597 212 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 PHC1P78364 1004 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 LRRC74AQ0VAA2 488 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 POU4F3Q15319 338 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 ZNF141Q15928 474 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 NDUFAF6Q330K2 333 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 TRIML2Q8N7C3 387 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 OIT3Q8WWZ8 545 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 ARSGQ96EG1 525 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 MRGPRX4Q96LA9 322 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 WFIKKN1Q96NZ8 548 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 KLHDC3Q9BQ90 382 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 SLC35A5Q9BS91 424 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 POLE3Q9NRF9 147 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 PLSCR4Q9NRQ2 329 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 AIG1Q9NVV5 245 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 MARCOQ9UEW3 520 aaPredicted RBP15.09■□□□□ 0.01
CLK3-210ENST00000563112 BTNL2Q9UIR0 455 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 MKLN1Q9UL63 735 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 CLEC4AQ9UMR7 237 aa15.09■□□□□ 0.01
CLK3-210ENST00000563112 SNNO75324 88 aaPredicted RBP15.08■□□□□ 0
CLK3-210ENST00000563112 CSTAP01040 98 aa15.08■□□□□ 0
CLK3-210ENST00000563112 RAF1P04049 648 aa15.08■□□□□ 0
CLK3-210ENST00000563112 GUSBP08236 651 aa15.08■□□□□ 0
CLK3-210ENST00000563112 KITP10721 976 aa15.08■□□□□ 0
CLK3-210ENST00000563112 PRKCAP17252 672 aa15.08■□□□□ 0
CLK3-210ENST00000563112 IL11P20809 199 aa15.08■□□□□ 0
CLK3-210ENST00000563112 EPHA3P29320 983 aa15.08■□□□□ 0
CLK3-210ENST00000563112 ANXA11P50995 505 aaKnown RBP15.08■□□□□ 0
CLK3-210ENST00000563112 UFM1P61960 85 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms