RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 OR8H2Q8N162 312 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 OSTF1Q92882 214 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 SLC35A4Q96G79 324 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 ZNF300Q96RE9 604 aaPredicted RBP8.55□□□□□ -1.04
VPS39-205ENST00000562258 NODALQ96S42 347 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 CCM2LQ9NUG4 571 aaPredicted RBP8.55□□□□□ -1.04
VPS39-205ENST00000562258 GALNT8Q9NY28 637 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 PDP2Q9P2J9 529 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 ZNF443Q9Y2A4 671 aaPredicted RBP8.55□□□□□ -1.04
VPS39-205ENST00000562258 FNDC1Q4ZHG4 1894 aaPredicted RBP8.55□□□□□ -1.04
VPS39-205ENST00000562258 MASP2O00187 686 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 CASC3O15234 703 aaKnown RBP8.55□□□□□ -1.04
VPS39-205ENST00000562258 OR2T1O43869 369 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 PRAMEF4O60810 478 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 WDPCPO95876 746 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 C1QAP02745 245 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 STSP08842 583 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 PCGF2P35227 344 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 ZNF84P51523 738 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 RNF4P78317 190 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 SLC3A1Q07837 685 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 VEZF1Q14119 521 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 ALG10Q5BKT4 473 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 PRAMEF9Q5VWM5 478 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 ZNF425Q6IV72 752 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 SHFQ7M4L6 423 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 PTRH1Q86Y79 214 aaKnown RBP8.55□□□□□ -1.04
VPS39-205ENST00000562258 RBM45Q8IUH3 476 aaKnown RBP8.55□□□□□ -1.04
VPS39-205ENST00000562258 FGF11Q92914 225 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 HS6ST2Q96MM7 605 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 FAM192AQ9GZU8 254 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 C12orf49Q9H741 205 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 GALNT9Q9HCQ5 603 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 AGPAT4Q9NRZ5 378 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 C19orf53Q9UNZ5 99 aaPredicted RBP8.55□□□□□ -1.04
VPS39-205ENST00000562258 IER3IP1Q9Y5U9 82 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 LOC100130705A0A1B0GUX0 176 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 A0A1W2PNR3 127 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 BLACEA4D250 179 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 FAM183AA6NL82 134 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 XPNPEP2O43895 674 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 LILRB5O75023 590 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 ANXA2P07355 339 aaKnown RBP8.55□□□□□ -1.04
VPS39-205ENST00000562258 STT3AP46977 705 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 SOX2P48431 317 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 ULK3Q6PHR2 472 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 SERPINA11Q86U17 422 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 BPIFA2Q96DR5 249 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 ZC3HAV1LQ96H79 300 aaKnown RBP8.55□□□□□ -1.04
VPS39-205ENST00000562258 GNRHR2Q96P88 292 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 SDF2Q99470 211 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 LAMP5Q9UJQ1 280 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 TCFL5Q9UL49 500 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 YARS2Q9Y2Z4 477 aaKnown RBP8.55□□□□□ -1.04
VPS39-205ENST00000562258 BRCA2P51587 3418 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 ESPL1Q14674 2120 aa8.55□□□□□ -1.04
VPS39-205ENST00000562258 SMIM30A4D0T7 59 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 KCNK5O95279 499 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 PLATP00750 562 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 CD2P06729 351 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 CTSBP07858 339 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 PABPC4LP0CB38 370 aaKnown RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 NR2C1P13056 603 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 GM2AP17900 193 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 CPOXP36551 454 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 SLC6A8P48029 635 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 SELENOVP59797 346 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 QPRTQ15274 297 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 LEG1Q6P5S2 330 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 WDR74Q6RFH5 385 aaPredicted RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 OR6T1Q8NGN1 323 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 OR5M9Q8NGP3 310 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 GNPDA2Q8TDQ7 276 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 NEURL3Q96EH8 262 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 IP6K3Q96PC2 410 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 SERHL2Q9H4I8 314 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 GNG8Q9UK08 70 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 PCOLCE2Q9UKZ9 415 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 MPDZO75970 2070 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 GJE1A6NN92 205 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 FAAHO00519 579 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 NKX2-8O15522 239 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 MGRN1O60291 552 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 SERPINA3P01011 423 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 CSF2RBP32927 897 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 TRHRP34981 398 aaPredicted RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 MAN2A2P49641 1150 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 EFNA3P52797 238 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 TIMM50Q3ZCQ8 353 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 PLBD1Q6P4A8 553 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 LINC00471Q8N535 108 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 SFXN5Q8TD22 340 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 CPPED1Q9BRF8 314 aaPredicted RBP8.54□□□□□ -1.04
VPS39-205ENST00000562258 C1QTNF3Q9BXJ4 246 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 PINK1Q9BXM7 581 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 HDHD2Q9H0R4 259 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 SSR3Q9UNL2 185 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 A0A1W2PPK0 400 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 SH3PXD2BA1X283 911 aa8.54□□□□□ -1.04
VPS39-205ENST00000562258 TVP23AA6NH52 213 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms