RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 LIM2P55344 173 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 OR2B6P58173 313 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 DSTNP60981 165 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 EFNB1P98172 346 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CDK6Q00534 326 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 BNC1Q01954 994 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SEMG2Q02383 582 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PRKCZQ05513 592 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 LTBQ06643 244 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 HSPA14Q0VDF9 509 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SREBF2Q12772 1141 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SLAMF1Q13291 335 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ILKQ13418 452 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TNK1Q13470 666 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 NAE1Q13564 534 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TPBGQ13641 420 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 DMC1Q14565 340 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 LARS2Q15031 903 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 PTGES3Q15185 160 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 SEC23BQ15437 767 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SPHARQ15513 63 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 DUSP7Q16829 419 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SLC5A12Q1EHB4 618 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ZFP69Q49AA0 526 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 BCL7AQ4VC05 210 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 MPPE1Q53F39 396 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SOWAHCQ53LP3 525 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 YIF1BQ5BJH7 314 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 XKR6Q5GH73 641 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 C3orf38Q5JPI3 329 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CCNJQ5T5M9 372 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CPTPQ5TA50 214 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 RSBN1Q5VWQ0 802 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 CST9Q5W186 159 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 HIST2H2BCQ6DN03 193 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 FRMPD2BQ6IN97 320 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ADNP2Q6IQ32 1131 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 REEP3Q6NUK4 255 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 RGMBQ6NW40 437 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 MED27Q6P2C8 311 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PGBD2Q6P3X8 592 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TRIM40Q6P9F5 258 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 BHLHB9Q6PI77 547 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 BRAT1Q6PJG6 821 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CD200R1LQ6Q8B3 271 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 AGTRAPQ6RW13 159 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 METAP1DQ6UB28 335 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 UNC5DQ6UXZ4 953 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 GDPD4Q6W3E5 623 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TMPRSS11AQ6ZMR5 421 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 DPY19L3Q6ZPD9 716 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 QSOX2Q6ZRP7 698 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 RFLNAQ6ZTI6 216 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TRILQ7L0X0 811 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 DPPA4Q7L190 304 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 DNAJB7Q7Z6W7 309 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 KIAA0907Q7Z7F0 614 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 TMPRSS11BQ86T26 416 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 RAB43Q86YS6 212 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 LAX1Q8IWV1 398 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 BBS7Q8IWZ6 715 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PHC2Q8IXK0 858 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SYTL1Q8IYJ3 562 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TCEAL8Q8IYN2 117 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 RDH10Q8IZV5 341 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TAGAPQ8N103 731 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 NAGSQ8N159 534 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SLC39A11Q8N1S5 342 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 LINC00471Q8N535 108 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 NATD1Q8N6N6 113 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ARL14EPQ8N8R7 260 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 GDPD1Q8N9F7 314 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 Q8N9G6 341 aaPredicted RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 ASCC1Q8N9N2 400 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 ZNF485Q8NCK3 441 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 VPS37AQ8NEZ2 397 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PROKR2Q8NFJ6 384 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 DBF4BQ8NFT6 615 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 OR8J1Q8NGP2 316 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 HUS1BQ8NHY5 278 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CDC26Q8NHZ8 85 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 WDR36Q8NI36 951 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 GRPEL2Q8TAA5 225 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ZNF461Q8TAF7 563 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 GPR151Q8TDV0 419 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 UTP15Q8TED0 518 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 C16orf78Q8WTQ4 265 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 CAPSLQ8WWF8 208 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ASZ1Q8WWH4 475 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 RASSF5Q8WWW0 418 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ELMO1Q92556 727 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 NEIL2Q969S2 332 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 SLC25A46Q96AG3 418 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TMEM159Q96B96 161 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 PPCDCQ96CD2 204 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 MTFMTQ96DP5 389 aaKnown RBP2.29□□□□□ -2.04
SPG11-223ENST00000560858 RSPRY1Q96DX4 576 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 ERLEC1Q96DZ1 483 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 NEURL3Q96EH8 262 aa2.29□□□□□ -2.04
SPG11-223ENST00000560858 TMEM80Q96HE8 168 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms