RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 CENPHQ9H3R5 247 aa9.14□□□□□ -0.95
LDLR-214ENST00000560628 AKTIPQ9H8T0 292 aa9.14□□□□□ -0.95
LDLR-214ENST00000560628 DLL4Q9NR61 685 aa9.14□□□□□ -0.95
LDLR-214ENST00000560628 BEX4Q9NWD9 120 aaPredicted RBP9.14□□□□□ -0.95
LDLR-214ENST00000560628 PAQR5Q9NXK6 330 aaPredicted RBP9.14□□□□□ -0.95
LDLR-214ENST00000560628 ICAM5Q9UMF0 924 aa9.14□□□□□ -0.95
LDLR-214ENST00000560628 MTORP42345 2549 aa9.14□□□□□ -0.95
LDLR-214ENST00000560628 ACANP16112 2415 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 NPIPB9F8W1W9 429 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 FCMRO60667 390 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 CYP7B1O75881 506 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 CPSF4O95639 269 aaKnown RBP9.13□□□□□ -0.95
LDLR-214ENST00000560628 TUBBP07437 444 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 MAD2L1Q13257 205 aaPredicted RBP9.13□□□□□ -0.95
LDLR-214ENST00000560628 MPP2Q14168 576 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 GPR68Q15743 365 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 ACKR1Q16570 336 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 PDZK1Q5T2W1 519 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 GTF2IRD2BQ6EKJ0 949 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 Q71RC1 249 aaPredicted RBP9.13□□□□□ -0.95
LDLR-214ENST00000560628 NUFIP2Q7Z417 695 aaKnown RBP9.13□□□□□ -0.95
LDLR-214ENST00000560628 GTF2IRD2Q86UP8 949 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 ANKRD46Q86W74 232 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 WFDC8Q8IUA0 241 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 KRTAP1-3Q8IUG1 177 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 TMCO5AQ8N6Q1 288 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 OR4A15Q8NGL6 344 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 ABHD3Q8WU67 409 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 MOAP1Q96BY2 351 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 REXO5Q96IC2 774 aaKnown RBP9.13□□□□□ -0.95
LDLR-214ENST00000560628 MARK4Q96L34 752 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 SRXN1Q9BYN0 137 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 DPY30Q9C005 99 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 SERHL2Q9H4I8 314 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 KCNK9Q9NPC2 374 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 GLRX2Q9NS18 164 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 NOP53Q9NZM5 478 aaKnown RBP9.13□□□□□ -0.95
LDLR-214ENST00000560628 DTNAQ9Y4J8 743 aa9.13□□□□□ -0.95
LDLR-214ENST00000560628 SETD2Q9BYW2 2564 aaPredicted RBP9.13□□□□□ -0.95
LDLR-214ENST00000560628 IGHV3-15A0A0B4J1V0 119 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 CENPVL1A0A0U1RR11 272 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 RNF103-CHMP3A0A140T963 221 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 SERINC4A6NH21 518 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 BIRC5O15392 142 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 ZNF264O43296 627 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 KLF4O43474 513 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 SMPD2O60906 423 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 SOX30O94993 753 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 PLAUP00749 431 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 MYZAPP0CAP1 466 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 FOSL1P15407 271 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 PRKCAP17252 672 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 BGNP21810 368 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 ENPP1P22413 925 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 LOXP28300 417 aaPredicted RBP9.12□□□□□ -0.95
LDLR-214ENST00000560628 AGTR1P30556 359 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 SLC1A6P48664 564 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 RPL14P50914 215 aaKnown RBP9.12□□□□□ -0.95
LDLR-214ENST00000560628 CCR4P51679 360 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 C21orf58P58505 322 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 PHC1P78364 1004 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 QPRTQ15274 297 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 TSC22D1Q15714 1073 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 ZNF239Q16600 458 aaKnown RBP9.12□□□□□ -0.95
LDLR-214ENST00000560628 BHLHB9Q6PI77 547 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 BEND4Q6ZU67 534 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 STK32CQ86UX6 486 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 P3H2Q8IVL5 708 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 TUSC5Q8IXB3 177 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 MREGQ8N565 214 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 OR5W2Q8NH69 310 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 XAGE5Q8WWM1 108 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 RAB8BQ92930 207 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 PIGTQ969N2 578 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 POM121Q96HA1 1249 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 SLC35G5Q96KT7 338 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 SORT1Q99523 831 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 PAIP2Q9BPZ3 127 aaKnown RBP9.12□□□□□ -0.95
LDLR-214ENST00000560628 THUMPD3Q9BV44 507 aaKnown RBP9.12□□□□□ -0.95
LDLR-214ENST00000560628 NUF2Q9BZD4 464 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 ACTR6Q9GZN1 396 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 QRSL1Q9H0R6 528 aaKnown RBP9.12□□□□□ -0.95
LDLR-214ENST00000560628 OR51I1Q9H343 314 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 TIGARQ9NQ88 270 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 PNPOQ9NVS9 261 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 ASIC5Q9NY37 505 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 KCNE5Q9UJ90 142 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 MKLN1Q9UL63 735 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 PCDHGB4Q9UN71 923 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 RAP2CQ9Y3L5 183 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 ACTL7BQ9Y614 415 aa9.12□□□□□ -0.95
LDLR-214ENST00000560628 GPC6Q9Y625 555 aaPredicted RBP9.12□□□□□ -0.95
LDLR-214ENST00000560628 HRNRQ86YZ3 2850 aaPredicted RBP9.12□□□□□ -0.95
LDLR-214ENST00000560628 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.11□□□□□ -0.95
LDLR-214ENST00000560628 A0A1W2PNR3 127 aa9.11□□□□□ -0.95
LDLR-214ENST00000560628 DUXAA6NLW8 204 aa9.11□□□□□ -0.95
LDLR-214ENST00000560628 GJE1A6NN92 205 aa9.11□□□□□ -0.95
LDLR-214ENST00000560628 ESPNB1AK53 854 aa9.11□□□□□ -0.95
LDLR-214ENST00000560628 C9JVG2 144 aa9.11□□□□□ -0.95
LDLR-214ENST00000560628 RNASET2O00584 256 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms