RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 ABCD3P28288 659 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 SMSP52788 366 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 PNLIPRP2P54317 469 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 CTBP2P56545 445 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 TUBA3CQ13748 450 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 RAB39AQ14964 217 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 CD226Q15762 336 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 NEDD8Q15843 81 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 ACSM5Q6NUN0 579 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 ULK3Q6PHR2 472 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 PAPD4Q6PIY7 484 aaKnown RBP11.65□□□□□ -0.54
USP3-213ENST00000559711 CASP12Q6UXS9 341 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 HSDL2Q6YN16 418 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 TMPRSS11FQ6ZWK6 438 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 CPEB2Q7Z5Q1 589 aaKnown RBP11.65□□□□□ -0.54
USP3-213ENST00000559711 MEX3DQ86XN8 651 aaKnown RBP11.65□□□□□ -0.54
USP3-213ENST00000559711 SUMF1Q8NBK3 374 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 OR13F1Q8NGS4 319 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 NUBPLQ8TB37 319 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 GGHQ92820 318 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 OSTF1Q92882 214 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 MESP1Q9BRJ9 268 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 RHNO1Q9BSD3 238 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 CRB3Q9BUF7 120 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 POLDIP3Q9BY77 421 aaKnown RBP11.65□□□□□ -0.54
USP3-213ENST00000559711 PLA2G12AQ9BZM1 189 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 DSN1Q9H410 356 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 EGLN3Q9H6Z9 239 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 CLN6Q9NWW5 311 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 C19orf25Q9UFG5 118 aaPredicted RBP11.65□□□□□ -0.54
USP3-213ENST00000559711 TMEM5Q9Y2B1 443 aa11.65□□□□□ -0.54
USP3-213ENST00000559711 A0A1W2PQD3 144 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 CDC14CA4D256 554 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 TMX2-CTNND1H3BSU7 103 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 CDC42EP2O14613 210 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 ICOSLGO75144 302 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 SEC14L2O76054 403 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 UBL4AP11441 157 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 IL12BP29460 328 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 GPR4P46093 362 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 E2F1Q01094 437 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 EMX1Q04741 257 aaPredicted RBP11.65□□□□□ -0.55
USP3-213ENST00000559711 PLCXD2Q0VAA5 305 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 SKP2Q13309 424 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 OCLNQ16625 522 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 NDUFAF6Q330K2 333 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 ALG10BQ5I7T1 473 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 SLC27A4Q6P1M0 643 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 KIRREL2Q6UWL6 708 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 ZNF620Q6ZNG0 422 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 PRR22Q8IZ63 422 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 FAM26EQ8N5C1 309 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 IQCF1Q8N6M8 205 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 OR8D4Q8NGM9 314 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 OR8K3Q8NH51 312 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 TEX47Q8TBZ9 253 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 GRHL3Q8TE85 626 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 DNAJA4Q8WW22 397 aaPredicted RBP11.65□□□□□ -0.55
USP3-213ENST00000559711 FGF11Q92914 225 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 MUL1Q969V5 352 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 PMEPA1Q969W9 287 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 OMA1Q96E52 524 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 ARSGQ96EG1 525 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 VMP1Q96GC9 406 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 Q96MT0 163 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 LPAR4Q99677 370 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 CCDC90BQ9GZT6 254 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 MEPEQ9NQ76 525 aaPredicted RBP11.65□□□□□ -0.55
USP3-213ENST00000559711 MED31Q9Y3C7 131 aa11.65□□□□□ -0.55
USP3-213ENST00000559711 LOC102723996A0A087X1L8 192 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 ALG1L2C9J202 215 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 ZNF701M0R085 212 aaPredicted RBP11.64□□□□□ -0.55
USP3-213ENST00000559711 MT-ND2P03891 347 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 MAKP20794 623 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 ENDOUP21128 410 aaKnown RBP11.64□□□□□ -0.55
USP3-213ENST00000559711 SLC15A1P46059 708 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 PCYT1AP49585 367 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 FAM199XQ6PEV8 388 aaPredicted RBP11.64□□□□□ -0.55
USP3-213ENST00000559711 FAM198BQ6UWH4 519 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 CDK20Q8IZL9 346 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 SVOPQ8N4V2 548 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 AMER2Q8N7J2 671 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 PFN4Q8NHR9 129 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 PHOSPHO1Q8TCT1 267 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 FAR1Q8WVX9 515 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 MYDGFQ969H8 173 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 IL4I1Q96RQ9 567 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 CCNL2Q96S94 520 aaPredicted RBP11.64□□□□□ -0.55
USP3-213ENST00000559711 CDC6Q99741 560 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 COPS4Q9BT78 406 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 EDEM2Q9BV94 578 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 ULBP3Q9BZM4 244 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 STRADBQ9C0K7 418 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 LAT2Q9GZY6 243 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 CXorf56Q9H5V9 222 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 AMBNQ9NP70 447 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 TMEM9BQ9NQ34 198 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 C20orf141Q9NUB4 165 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 TVP23BQ9NYZ1 205 aa11.64□□□□□ -0.55
USP3-213ENST00000559711 CNOT2Q9NZN8 540 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms