RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SERPINA1P01009 418 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 TNFRSF1BP20333 461 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 ME2P23368 584 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 DPP4P27487 766 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 GDF1P27539 372 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 MSX1P28360 303 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 RYKP34925 604 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 ACAA2P42765 397 aaKnown RBP11.64□□□□□ -0.55
SHMT2-227ENST00000557269 P2RX1P51575 399 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 WIPI1Q5MNZ9 446 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-227ENST00000557269 FAM180AQ6UWF9 173 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 YRDCQ86U90 279 aaKnown RBP11.64□□□□□ -0.55
SHMT2-227ENST00000557269 SLC22A16Q86VW1 577 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 RBM45Q8IUH3 476 aaKnown RBP11.64□□□□□ -0.55
SHMT2-227ENST00000557269 LACC1Q8IV20 430 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 ULK2Q8IYT8 1036 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 ZNF843Q8N446 348 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 FAM109AQ8N4B1 249 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 TMCO5AQ8N6Q1 288 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 FAM86B1Q8N7N1 296 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 FAM83FQ8NEG4 500 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-227ENST00000557269 TNIP2Q8NFZ5 429 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 OR5M1Q8NGP8 315 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 OR5W2Q8NH69 310 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 GPR119Q8TDV5 335 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 FAR1Q8WVX9 515 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 FAM162AQ96A26 154 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 CCDC124Q96CT7 223 aaKnown RBP11.64□□□□□ -0.55
SHMT2-227ENST00000557269 SPATA5L1Q9BVQ7 753 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 PINK1Q9BXM7 581 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 EXOSC3Q9NQT5 275 aaKnown RBP11.64□□□□□ -0.55
SHMT2-227ENST00000557269 NPIPA1Q9UND3 350 aa11.64□□□□□ -0.55
SHMT2-227ENST00000557269 RPH3AQ9Y2J0 694 aaPredicted RBP11.64□□□□□ -0.55
SHMT2-227ENST00000557269 SPENQ96T58 3664 aaKnown RBP11.64□□□□□ -0.55
SHMT2-227ENST00000557269 ANKUB1A6NFN9 424 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 M0R3H8 397 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 ACOT7O00154 380 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 ACOT8O14734 319 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 TPST2O60704 377 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 LGI1O95970 557 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 CRYABP02511 175 aaKnown RBP11.63□□□□□ -0.55
SHMT2-227ENST00000557269 HPNP05981 417 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 FESP07332 822 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 LINGO3P0C6S8 592 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 ENDOUP21128 410 aaKnown RBP11.63□□□□□ -0.55
SHMT2-227ENST00000557269 ATP6V1B2P21281 511 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 RASSF2P50749 326 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 CCR4P51679 360 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 TDGF1P3P51864 188 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 ZNF136P52737 540 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 DSCR4P56555 118 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-227ENST00000557269 B3GALT5-AS1P59052 145 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 SELENOWP63302 87 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 HSF1Q00613 529 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 TRIM25Q14258 630 aaKnown RBP11.63□□□□□ -0.55
SHMT2-227ENST00000557269 SLC10A1Q14973 349 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 TOMM20Q15388 145 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 NPTX1Q15818 432 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 CYP2R1Q6VVX0 501 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 VTCN1Q7Z7D3 282 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 SPPL2CQ8IUH8 684 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 GRAMD2AQ8IUY3 354 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 POC1BQ8TC44 478 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 SLC26A7Q8TE54 656 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 NR4A3Q92570 626 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 UTP4Q969X6 686 aaKnown RBP11.63□□□□□ -0.55
SHMT2-227ENST00000557269 TPD52L3Q96J77 140 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 ARHGDIGQ99819 225 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 SLX1AQ9BQ83 275 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 OR2B2Q9GZK3 357 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 SLC6A15Q9H2J7 730 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 GORASP2Q9H8Y8 452 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 CACYBPQ9HB71 228 aaKnown RBP11.63□□□□□ -0.55
SHMT2-227ENST00000557269 OLAHQ9NV23 265 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 MED17Q9NVC6 651 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 B4GALT7Q9UBV7 327 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 VDAC3Q9Y277 283 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 SNX13Q9Y5W8 968 aa11.63□□□□□ -0.55
SHMT2-227ENST00000557269 CFAP73A6NFT4 308 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 ZNF682O95780 498 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 NUDT14O95848 222 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 IFNA14P01570 189 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 HK1P19367 917 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 HTR2AP28223 471 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 SRD5A2P31213 254 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 OR1E2P47887 323 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 SUMO3P55854 103 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-227ENST00000557269 EPS8Q12929 822 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 BNIP2Q12982 314 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 CBFBQ13951 182 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 QPRTQ15274 297 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 NRF1Q16656 503 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 TMEM44Q2T9K0 475 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 PLPPR5Q32ZL2 321 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 ENPP6Q6UWR7 440 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 CBLL1Q75N03 491 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 FGD2Q7Z6J4 655 aa11.62□□□□□ -0.55
SHMT2-227ENST00000557269 TSPYL5Q86VY4 417 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-227ENST00000557269 CHERPQ8IWX8 916 aaKnown RBP11.62□□□□□ -0.55
SHMT2-227ENST00000557269 TOR1AIP2Q8NFQ8 470 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms