RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 TOP1P11387 765 aaKnown RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 XRCC1P18887 633 aaPredicted RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 TSPAN8P19075 237 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 SERPINA2P20848 420 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 PRDX6P30041 224 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 AXLP30530 894 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 NOVA1P51513 510 aaKnown RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 HNRNPA3P51991 378 aaKnown RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 KRTAP10-1P60331 282 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 LRRC63Q05C16 580 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 GABPB1Q06547 395 aaPredicted RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 EBI3Q14213 229 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 NDUFA9Q16795 377 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 DNAJC21Q5F1R6 531 aaKnown RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 CASC10Q5T4H9 136 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 OR6B2Q6IFH4 312 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 PLBD1Q6P4A8 553 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 SLC39A4Q6P5W5 647 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 TMEM26Q6ZUK4 368 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 KDM8Q8N371 416 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 ARL6IP6Q8N6S5 226 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 C15orf54Q8N8G6 183 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 SUMF2Q8NBJ7 301 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 OR5AU1Q8NGC0 362 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 OR56B1Q8NGI3 324 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 FAM210BQ96KR6 192 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 ZNF396Q96N95 335 aaPredicted RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 LCE3DQ9BYE3 92 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 CHIAQ9BZP6 476 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 SUDS3Q9H7L9 328 aaPredicted RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 UTP6Q9NYH9 597 aaKnown RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 MRPL39Q9NYK5 338 aaKnown RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 XPO7Q9UIA9 1087 aaKnown RBP2.01□□□□□ -2.09
VRK1-202ENST00000553683 BTNL2Q9UIR0 455 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 NEU3Q9UQ49 428 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 MAB21L2Q9Y586 359 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 CEP350Q5VT06 3117 aa2.01□□□□□ -2.09
VRK1-202ENST00000553683 CARMIL1Q5VZK9 1371 aa2□□□□□ -2.09
VRK1-202ENST00000553683 MTCL1Q9Y4B5 1905 aaKnown RBP2□□□□□ -2.09
VRK1-202ENST00000553683 HSFX4A0A1B0GTS1 333 aaPredicted RBP2□□□□□ -2.09
VRK1-202ENST00000553683 A0A1B0GWB2 263 aa2□□□□□ -2.09
VRK1-202ENST00000553683 HSFX3A0A1B0GWH4 333 aaPredicted RBP2□□□□□ -2.09
VRK1-202ENST00000553683 NKX2-6A6NCS4 301 aa2□□□□□ -2.09
VRK1-202ENST00000553683 OR6C65A6NJZ3 312 aa2□□□□□ -2.09
VRK1-202ENST00000553683 LRRC30A6NM36 301 aa2□□□□□ -2.09
VRK1-202ENST00000553683 PP2D1A8MPX8 630 aa2□□□□□ -2.09
VRK1-202ENST00000553683 FAM25EA8MYX2 175 aa2□□□□□ -2.09
VRK1-202ENST00000553683 SNAI2O43623 268 aa2□□□□□ -2.09
VRK1-202ENST00000553683 LALBAP00709 142 aa2□□□□□ -2.09
VRK1-202ENST00000553683 ALPPP05187 535 aa2□□□□□ -2.09
VRK1-202ENST00000553683 RRASP10301 218 aa2□□□□□ -2.09
VRK1-202ENST00000553683 ALPPL2P10696 532 aa2□□□□□ -2.09
VRK1-202ENST00000553683 PRDX3P30048 256 aaKnown RBP2□□□□□ -2.09
VRK1-202ENST00000553683 HTR1FP30939 366 aa2□□□□□ -2.09
VRK1-202ENST00000553683 NUDT1P36639 197 aa2□□□□□ -2.09
VRK1-202ENST00000553683 CTRLP40313 264 aa2□□□□□ -2.09
VRK1-202ENST00000553683 CSNK1DP48730 415 aa2□□□□□ -2.09
VRK1-202ENST00000553683 PPOXP50336 477 aa2□□□□□ -2.09
VRK1-202ENST00000553683 LIM2P55344 173 aa2□□□□□ -2.09
VRK1-202ENST00000553683 STARD6P59095 220 aa2□□□□□ -2.09
VRK1-202ENST00000553683 BPIFB3P59826 476 aa2□□□□□ -2.09
VRK1-202ENST00000553683 HERVK_113P61574 105 aa2□□□□□ -2.09
VRK1-202ENST00000553683 NTHL1P78549 312 aa2□□□□□ -2.09
VRK1-202ENST00000553683 CHRNB3Q05901 458 aa2□□□□□ -2.09
VRK1-202ENST00000553683 DMTNQ08495 405 aa2□□□□□ -2.09
VRK1-202ENST00000553683 SLC10A7Q0GE19 358 aa2□□□□□ -2.09
VRK1-202ENST00000553683 EXOSC2Q13868 293 aaKnown RBP2□□□□□ -2.09
VRK1-202ENST00000553683 PARP10Q53GL7 1025 aa2□□□□□ -2.09
VRK1-202ENST00000553683 FAHD2BQ6P2I3 314 aaPredicted RBP2□□□□□ -2.09
VRK1-202ENST00000553683 UNQ9370/PRO34162Q6UXP9 181 aa2□□□□□ -2.09
VRK1-202ENST00000553683 CYS1Q717R9 158 aa2□□□□□ -2.09
VRK1-202ENST00000553683 EFCAB13Q8IY85 973 aa2□□□□□ -2.09
VRK1-202ENST00000553683 CERS5Q8N5B7 392 aa2□□□□□ -2.09
VRK1-202ENST00000553683 TMEM252Q8N6L7 170 aa2□□□□□ -2.09
VRK1-202ENST00000553683 BCORP1Q8N888 145 aa2□□□□□ -2.09
VRK1-202ENST00000553683 C20orf203Q8NBC4 194 aa2□□□□□ -2.09
VRK1-202ENST00000553683 NEIL3Q8TAT5 605 aa2□□□□□ -2.09
VRK1-202ENST00000553683 STARD4Q96DR4 205 aa2□□□□□ -2.09
VRK1-202ENST00000553683 FAHD2AQ96GK7 314 aa2□□□□□ -2.09
VRK1-202ENST00000553683 VSTM2LQ96N03 204 aa2□□□□□ -2.09
VRK1-202ENST00000553683 TBX15Q96SF7 602 aa2□□□□□ -2.09
VRK1-202ENST00000553683 LZTS2Q9BRK4 669 aa2□□□□□ -2.09
VRK1-202ENST00000553683 SPXQ9BT56 116 aa2□□□□□ -2.09
VRK1-202ENST00000553683 THAP9Q9H5L6 903 aa2□□□□□ -2.09
VRK1-202ENST00000553683 NARFLQ9H6Q4 476 aa2□□□□□ -2.09
VRK1-202ENST00000553683 RABL2BQ9UNT1 228 aa2□□□□□ -2.09
VRK1-202ENST00000553683 CACNG2Q9Y698 323 aa2□□□□□ -2.09
VRK1-202ENST00000553683 SPACA6W5XKT8 324 aa2□□□□□ -2.09
VRK1-202ENST00000553683 MYO10Q9HD67 2058 aa1.99□□□□□ -2.09
VRK1-202ENST00000553683 ERICH4A6NGS2 130 aa1.99□□□□□ -2.09
VRK1-202ENST00000553683 ZNF705EA8MWA4 302 aaPredicted RBP1.99□□□□□ -2.09
VRK1-202ENST00000553683 K7N7A8 449 aa1.99□□□□□ -2.09
VRK1-202ENST00000553683 NBR2O15453 112 aa1.99□□□□□ -2.09
VRK1-202ENST00000553683 ZNF264O43296 627 aa1.99□□□□□ -2.09
VRK1-202ENST00000553683 HCRTR1O43613 425 aa1.99□□□□□ -2.09
VRK1-202ENST00000553683 ICOSLGO75144 302 aa1.99□□□□□ -2.09
VRK1-202ENST00000553683 OPN1LWP04000 364 aa1.99□□□□□ -2.09
VRK1-202ENST00000553683 TPM2P07951 284 aa1.99□□□□□ -2.09
VRK1-202ENST00000553683 CCDC172P0C7W6 258 aa1.99□□□□□ -2.09
VRK1-202ENST00000553683 ANXA3P12429 323 aa1.99□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms