RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 EFNA3P52797 238 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 NSDHLQ15738 373 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 CLPPQ16740 277 aaPredicted RBP24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 COX15Q7KZN9 410 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 OR4Q3Q8NH05 313 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 OR4C3Q8NH37 302 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 PFN4Q8NHR9 129 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 RNF217Q8TC41 542 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 LCORQ96JN0 433 aaPredicted RBP24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 SLC7A5P2Q9GIP4 190 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 VN1R1Q9GZP7 353 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 MRPS18AQ9NVS2 196 aaKnown RBP24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 DNAH14Q0VDD8 3507 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 ASXL3Q9C0F0 2248 aa24.26■■□□□ 1.47
CCDC88C-205ENST00000553403 IRGMA1A4Y4 181 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 CER1O95813 267 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 CSTAP01040 98 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 ADRA2AP08913 450 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 MAKP20794 623 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 LCN1P31025 176 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 LIPAP38571 399 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 ADH7P40394 386 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 TMEM44Q2T9K0 475 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 RPL13AP3Q6NVV1 102 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 SLC46A3Q7Z3Q1 461 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 ZNF527Q8NB42 609 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 ADIPOR1Q96A54 375 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 CLIP3Q96DZ5 547 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 ZNF426Q9BUY5 554 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 UBQLN4Q9NRR5 601 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 SIDT1Q9NXL6 827 aaKnown RBP24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 CABIN1Q9Y6J0 2220 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 RP1P56715 2156 aa24.25■■□□□ 1.47
CCDC88C-205ENST00000553403 KDM4EB2RXH2 506 aaPredicted RBP24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 PRODHO43272 600 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 ADAM11O75078 769 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 NR4A1P22736 598 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 OCA2Q04671 838 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 CLEC12AQ5QGZ9 265 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 BCDIN3DQ7Z5W3 292 aaKnown RBP24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 OR2T33Q8NG76 320 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 GRHL3Q8TE85 626 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 NUDT9Q9BW91 350 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 DPH1Q9BZG8 443 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 RACGAP1Q9H0H5 632 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 NXF5Q9H1B4 397 aaKnown RBP24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 SDK1Q7Z5N4 2213 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 PI4KAP42356 2102 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 IGLV3-12A0A075B6K2 115 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 SURF4O15260 269 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 CDK4P11802 303 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 KLHL22Q53GT1 634 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 ULK3Q6PHR2 472 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 BPIFA2Q96DR5 249 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 SAMD8Q96LT4 415 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 CCDC74BQ96LY2 380 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 OR6C1Q96RD1 312 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 SLC22A11Q9NSA0 550 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 RPS6KB2Q9UBS0 482 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 RARRES3Q9UL19 164 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 MKL2Q9ULH7 1088 aa24.24■■□□□ 1.47
CCDC88C-205ENST00000553403 COL5A1P20908 1838 aaPredicted RBP24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 OR6C76A6NM76 312 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 RCBTB2O95199 551 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 CKMT1AP12532 417 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 ARMCX4Q5H9R4 360 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 ALG10BQ5I7T1 473 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 SLC30A6Q6NXT4 461 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 LINC00114Q6XXX2 140 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 FAM71CQ8NEG0 241 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 EFHD2Q96C19 240 aaPredicted RBP24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 PHOX2BQ99453 314 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 OR52D1Q9H346 318 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 C20orf141Q9NUB4 165 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 TAS2R16Q9NYV7 291 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 DIMT1Q9UNQ2 313 aaKnown RBP24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 ERGIC3Q9Y282 383 aa24.23■■□□□ 1.47
CCDC88C-205ENST00000553403 ANGPT1Q15389 498 aa24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 FNDC7Q5VTL7 733 aa24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 SLC23A3Q6PIS1 610 aa24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 ANKK1Q8NFD2 765 aa24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 OR52L1Q8NGH7 329 aa24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 TBC1D15Q8TC07 691 aa24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 FANK1Q8TC84 345 aa24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 IFI44Q8TCB0 444 aa24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 PLEKHA8Q96JA3 519 aa24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 HHATLQ9HCP6 504 aa24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 ATP13A2Q9NQ11 1180 aa24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 MEPEQ9NQ76 525 aaPredicted RBP24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 CTSFQ9UBX1 484 aa24.22■■□□□ 1.47
CCDC88C-205ENST00000553403 C2orf92A0A1B0GVN3 265 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 ARHGAP33O14559 1287 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 TO15178 435 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 GRK5P34947 590 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 DUSP3P51452 185 aaPredicted RBP24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 EBPQ15125 230 aaKnown RBP24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 LAPTM4BQ86VI4 370 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 PRSS58Q8IYP2 241 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 OR52I1Q8NGK6 324 aa24.21■■□□□ 1.47
CCDC88C-205ENST00000553403 OR1N1Q8NGS0 311 aa24.21■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms