RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 TRAV6A0A075B6T7 132 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 LOC105369274A0A096LPK9 316 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 DAPL1A0PJW8 107 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 UNC119BA6NIH7 251 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 CENPBD1B2RD01 187 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 INMT-MINDY4F8WBC2 141 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF780AO75290 641 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 LYPD3O95274 346 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 HTR2BP41595 481 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 OR12D2P58182 307 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 RRAS2P62070 204 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 PPP2CBP62714 309 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 PPP2CAP67775 309 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 TNFRSF17Q02223 184 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 GUCA2AQ02747 115 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 SRSF5Q13243 272 aaKnown RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 SGCGQ13326 291 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 ADAM15Q13444 863 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 EXOSC7Q15024 291 aaKnown RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 SF3A2Q15428 464 aaKnown RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 OR1Q1Q15612 314 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 ARHGAP11BQ3KRB8 267 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 TMEM240Q5SV17 173 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 PRPF38BQ5VTL8 546 aaKnown RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 MZT2AQ6P582 158 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 ESPNLQ6ZVH7 1005 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 MEPCEQ7L2J0 689 aaKnown RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 RTL10Q7L3V2 364 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 GPR135Q8IZ08 494 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 TCTE3Q8IZS6 198 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 OR4N4Q8N0Y3 316 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 GJD3Q8N144 294 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 ARL14Q8N4G2 192 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 SLC37A3Q8NCC5 494 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 OR5T3Q8NGG3 340 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 OR5W2Q8NH69 310 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 ZFAND1Q8TCF1 268 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 GRHL3Q8TE85 626 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 LCN9Q8WX39 176 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 ABHD1Q96SE0 405 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 RAB11FIP5Q9BXF6 653 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 C1QTNF2Q9BXJ5 285 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 SLC17A9Q9BYT1 436 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 MTHFD2LQ9H903 347 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 KLHL1Q9NR64 748 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 MED17Q9NVC6 651 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF624Q9P2J8 865 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 LRRC72A6NJI9 287 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 J3QLW9 94 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 SGK494L7N484 410 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 EEF1E1O43324 174 aaKnown RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 ADAM11O75078 769 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 ALX3O95076 343 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 HMGN1P05114 100 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 SYPP08247 313 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 ZNF19P17023 458 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 FOXK2Q01167 660 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 RIN1Q13671 783 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 MTFR2Q6P444 385 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 METAP1DQ6UB28 335 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 PRR23CQ6ZRP0 262 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 ASPGQ86U10 573 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 SFTPA2Q8IWL1 248 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 OR2L13Q8N349 312 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 SRFBP1Q8NEF9 429 aaKnown RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 OR4K14Q8NGD5 310 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 OR51L1Q8NGJ5 315 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 OR5H6Q8NGV6 325 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 TMEM239Q8WW34 195 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 DEDD2Q8WXF8 326 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 HSD17B8Q92506 261 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 SNAPC3Q92966 411 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 TRIM63Q969Q1 353 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 GAL3ST3Q96A11 431 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 PEX11GQ96HA9 241 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 C4orf36Q96KX1 117 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 HS6ST2Q96MM7 605 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 CD180Q99467 661 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 KXD1Q9BQD3 176 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 THAP7Q9BT49 309 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 RPP25Q9BUL9 199 aaKnown RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 APOOQ9BUR5 198 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 SARGQ9BW04 601 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 IFT27Q9BW83 186 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 TEX12Q9BXU0 123 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 SLC28A3Q9HAS3 691 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 MEPEQ9NQ76 525 aaPredicted RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 KLHL21Q9UJP4 597 aa6.95□□□□□ -1.3
LIMA1-213ENST00000552720 TMA7Q9Y2S6 64 aaKnown RBP6.95□□□□□ -1.3
LIMA1-213ENST00000552720 TBC1D3DA0A087WVF3 549 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TBC1D3IA0A087WXS9 549 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TBC1D3EA0A087X179 549 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TBC1D3KA0A087X1G2 549 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 A0A0A6YYJ9 748 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 A0A0G2JK05 382 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 GXYLT2A0PJZ3 443 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TRAPPC13A5PLN9 417 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 TBC1D3FA6NER0 549 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-213ENST00000552720 SLC9B1P1A6NJY1 282 aa6.94□□□□□ -1.3
LIMA1-213ENST00000552720 DUXAA6NLW8 204 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms