RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 EXOSC2Q13868 293 aaKnown RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 MFSD13AQ14CX5 517 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ZIC1Q15915 447 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 GSG1Q2KHT4 349 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 KLHL12Q53G59 568 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 TMEM255AQ5JRV8 349 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 PXDC1Q5TGL8 231 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 CD276Q5ZPR3 534 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 METRNLQ641Q3 311 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 GPR139Q6DWJ6 353 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ABHD17CQ6PCB6 329 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 TMEM65Q6PI78 240 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 FAM111BQ6SJ93 734 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 FRRS1Q6ZNA5 592 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 MEPCEQ7L2J0 689 aaKnown RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF765Q7L2R6 523 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ANKRD33Q7Z3H0 272 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 BPHLQ86WA6 291 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 OR51Q1Q8NH59 317 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ABHD4Q8TB40 342 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 SFXN5Q8TD22 340 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 HAVCR2Q8TDQ0 301 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 GANCQ8TET4 914 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 GCDHQ92947 438 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 MS4A6EQ96DS6 147 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ELP4Q96EB1 424 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 COX14Q96I36 57 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 PGLYRP3Q96LB9 341 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 C12orf66Q96MD2 445 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 RBP7Q96R05 134 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 C1QTNF6Q9BXI9 259 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 PCBD2Q9H0N5 130 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 OR52D1Q9H346 318 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 DPAGT1Q9H3H5 408 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 SLC13A4Q9UKG4 626 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 NUP50Q9UKX7 468 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 TMEM5Q9Y2B1 443 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 MRPS7Q9Y2R9 242 aaKnown RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 NUBP2Q9Y5Y2 271 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ATG2BQ96BY7 2078 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 OR5K3A6NET4 321 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 OTOL1A6NHN0 477 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 A8MUA0 341 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 HIDE1A8MVS5 230 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 I3L521 148 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 PLPP2O43688 288 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 VEGFDO43915 354 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 FGF18O76093 207 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 TOXO94900 526 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 MT-ND4P03905 459 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 GYPBP06028 91 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 GKN3PP0CG01 181 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ANXA3P12429 323 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 CD53P19397 219 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 DRD5P21918 477 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 HIST1H1TP22492 207 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 PRKACBP22694 351 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 F8A1P23610 371 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ATP5A1P25705 553 aaKnown RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 HTR2AP28223 471 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 GSK3AP49840 483 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 SELENOPP49908 381 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF136P52737 540 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 HCCSP53701 268 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 VSX2P58304 361 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 SRP54P61011 504 aaKnown RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF85Q03923 595 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 PRDX1Q06830 199 aaKnown RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 CRYZQ08257 329 aaKnown RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 CAMK1Q14012 370 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 GALEQ14376 348 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 SLC9A5Q14940 896 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 DHCR24Q15392 516 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 MAPK14Q16539 360 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 COL28A1Q2UY09 1125 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 HSD17B12Q53GQ0 312 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 PYHIN1Q6K0P9 492 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ZNF836Q6ZNA1 936 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 GET4Q7L5D6 327 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 PXKQ7Z7A4 578 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 TPRA1Q86W33 373 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 IZUMO1Q8IYV9 350 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 OR5J2Q8NH18 312 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 CEP76Q8TAP6 659 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 LRRC20Q8TCA0 184 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 GIMAP1Q8WWP7 306 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ING5Q8WYH8 240 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 CDS1Q92903 461 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 HGDQ93099 445 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 MOAP1Q96BY2 351 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 OMA1Q96E52 524 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 WBP1Q96G27 269 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 PEX11GQ96HA9 241 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 ZFP3Q96NJ6 502 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 OR2M2Q96R28 347 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 INSM2Q96T92 566 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-212ENST00000552491 FAIM2Q9BWQ8 316 aa5.03□□□□□ -1.6
LIMA1-212ENST00000552491 C1QTNF7Q9BXJ2 289 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms