RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 A0A0G2JN53 185 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 CTAGE9A4FU28 777 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SDR42E2A6NKP2 422 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 C17orf105B2RV13 164 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 EEF1E1-BLOC1S5C9J1V9 151 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 EEF1E1O43324 174 aaKnown RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 ERI3O43414 337 aaKnown RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 TLX2O43763 284 aaPredicted RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 LDB3O75112 727 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SCELO95171 688 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SNX4O95219 450 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 FTCDO95954 541 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 ACTL6AO96019 429 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 CLPSP04118 112 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 IFNA16P05015 189 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 HIST1H2AGP0C0S8 130 aaPredicted RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 C1GALT1C1LP0DN25 315 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 MLNP12872 115 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 CREB1P16220 341 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 HIST1H2ADP20671 130 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 GSTM2P28161 218 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 PTPN6P29350 595 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 CASP3P42574 277 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SLC1A2P43004 574 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SLC6A12P48065 614 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 RGS4P49798 205 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 NAGLUP54802 743 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 MTTPP55157 894 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 CDKN2DP55273 166 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SLC37A1P57057 533 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 STXBP1P61764 594 aaKnown RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 KCNJ2P63252 427 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 EEF1A1P68104 462 aaKnown RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 DMTNQ08495 405 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 FAM27E3Q08E93 113 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 FUT7Q11130 342 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 BIKQ13323 160 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 GAB1Q13480 694 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SNX1Q13596 522 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 THOC5Q13769 683 aaKnown RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SERTAD2Q14140 314 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 DHX34Q14147 1143 aaKnown RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 RBBP5Q15291 538 aaKnown RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 EIPR1Q53HC9 387 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 PRAMEF20Q5VT98 475 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 EEF1A1P5Q5VTE0 462 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 ANKRD22Q5VYY1 191 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 TMEM81Q6P7N7 255 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF474Q6S9Z5 364 aaPredicted RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SBSNQ6UWP8 590 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 TMIGD1Q6UXZ0 262 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 RAD9BQ6WBX8 426 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 C12orf54Q6X4T0 127 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF793Q6ZN11 406 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 DNM1P46Q6ZS02 220 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SH2D5Q6ZV89 423 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 Q6ZWC4 215 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 KIAA1328Q86T90 577 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 LUZP2Q86TE4 346 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 THOC6Q86W42 341 aaKnown RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 EGFL6Q8IUX8 553 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 LIX1Q8N485 282 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 ARIH2OSQ8N7S6 290 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 CCDC89Q8N998 374 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 FAM47BQ8NA70 645 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 MCUQ8NE86 351 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 C7orf57Q8NEG2 295 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 TTLQ8NG68 377 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 OR2L5Q8NG80 312 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 OR10G3Q8NGC4 313 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 MPLKIPQ8TAP9 179 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SPPL2AQ8TCT8 520 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 ANKRD7Q92527 254 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 ABTB1Q969K4 478 aaPredicted RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 CTHRC1Q96CG8 243 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 STARD4Q96DR4 205 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 WDR34Q96EX3 536 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 LINGO1Q96FE5 620 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 REXO5Q96IC2 774 aaKnown RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 FAR2Q96K12 515 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 UBXN10Q96LJ8 280 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 TSNARE1Q96NA8 513 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 ZFP3Q96NJ6 502 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 PRR25Q96S07 402 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 SECISBP2Q96T21 854 aaKnown RBP3.18□□□□□ -1.9
LIMA1-206ENST00000550611 NDNQ99608 321 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 CCL19Q99731 98 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 MAPKAP1Q9BPZ7 522 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 TUBA1CQ9BQE3 449 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 PIGQQ9BRB3 760 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 TMEM204Q9BSN7 226 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 H2AFJQ9BTM1 129 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 DOHHQ9BU89 302 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 CCDC68Q9H2F9 335 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 PIGMQ9H3S5 423 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 CCDC134Q9H6E4 229 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 YY1AP1Q9H869 796 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 LYRM4Q9HD34 91 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 ARL15Q9NXU5 204 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms