RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 RNASE11Q8TAA1 199 aaKnown RBP13.99□□□□□ -0.17
CUX1-214ENST00000550008 SFXN5Q8TD22 340 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 DIO2Q92813 273 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 TDRD15B5MCY1 1934 aaKnown RBP13.99□□□□□ -0.17
CUX1-214ENST00000550008 CLEC2LP0C7M8 214 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 FOSL2P15408 326 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 ST6GAL1P15907 406 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 RAE1P78406 368 aaKnown RBP13.99□□□□□ -0.17
CUX1-214ENST00000550008 RPL13AP3Q6NVV1 102 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 CNIH2Q6PI25 160 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 MCEMP1Q8IX19 187 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 GPALPP1Q8IXQ4 340 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 OR7G2Q8NG99 324 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 OR51Q1Q8NH59 317 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 TMEM163Q8TC26 289 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 CNOT9Q92600 299 aaKnown RBP13.99□□□□□ -0.17
CUX1-214ENST00000550008 LPAR4Q99677 370 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 TCEAL2Q9H3H9 227 aaPredicted RBP13.99□□□□□ -0.17
CUX1-214ENST00000550008 OBP2AQ9NY56 170 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 TAS2R10Q9NYW0 307 aa13.99□□□□□ -0.17
CUX1-214ENST00000550008 SFTPDP35247 375 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 AKR1D1P51857 326 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 GALK2Q01415 458 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 ACSM5Q6NUN0 579 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 C19orf47Q8N9M1 422 aaKnown RBP13.98□□□□□ -0.17
CUX1-214ENST00000550008 C4orf36Q96KX1 117 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 SEMA4GQ9NTN9 838 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 CNOT2Q9NZN8 540 aaKnown RBP13.98□□□□□ -0.17
CUX1-214ENST00000550008 NFKBIL1Q9UBC1 381 aaPredicted RBP13.98□□□□□ -0.17
CUX1-214ENST00000550008 RARRES3Q9UL19 164 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 NDRG4Q9ULP0 352 aaKnown RBP13.98□□□□□ -0.17
CUX1-214ENST00000550008 UTRNP46939 3433 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 NOTOA8MTQ0 251 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 FGF17O60258 216 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 DRD5P21918 477 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 LIM2P55344 173 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 YPEL5P62699 121 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 ILKQ13418 452 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 ARFRP1Q13795 201 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 C4orf46Q504U0 113 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 RFT1Q96AA3 541 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 CMKLR1Q99788 373 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 MROQ9BYG7 248 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 A4GALTQ9NPC4 353 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 DAPP1Q9UN19 280 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 SVILO95425 2214 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 KCNE1BA0A087WTH5 132 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 YY2O15391 372 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 ZNF20P17024 532 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 PGCP20142 388 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 DRD3P35462 400 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 PITPNAQ00169 270 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 ZNF181Q2M3W8 571 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 C11orf91Q3C1V1 193 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 ALG10Q5BKT4 473 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 ZER1Q7Z7L7 766 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 LINC01555Q8NAE3 123 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 ORAI3Q9BRQ5 295 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 SIDT1Q9NXL6 827 aaKnown RBP13.98□□□□□ -0.17
CUX1-214ENST00000550008 PPP4R1LQ9P1A2 415 aa13.98□□□□□ -0.17
CUX1-214ENST00000550008 RPH3AQ9Y2J0 694 aaPredicted RBP13.98□□□□□ -0.17
CUX1-214ENST00000550008 TRIM23P36406 574 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 PRKXP51817 358 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 CRMP1Q14194 572 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 PEG10Q86TG7 708 aaKnown RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 BTBD2Q9BX70 525 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 GPN1Q9HCN4 374 aaPredicted RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 CD93Q9NPY3 652 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 KCNE3Q9Y6H6 103 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 APC2O95996 2303 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 ZC3H12DA2A288 527 aaKnown RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 EIF2DP41214 584 aaKnown RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 CXCL12P48061 93 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 RPS25P62851 125 aaKnown RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 RELAQ04206 551 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 AKIRIN2Q53H80 203 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 GDF7Q7Z4P5 450 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 PARP16Q8N5Y8 322 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 SLC35A4Q96G79 324 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 FOXQ1Q9C009 403 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 DPAGT1Q9H3H5 408 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 CBLCQ9ULV8 474 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 FARSAQ9Y285 508 aaKnown RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 AQP9O43315 295 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 UPK1BO75841 260 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 RGS9O75916 674 aaPredicted RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 ACTC1P68032 377 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 ACTA1P68133 377 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 RAB40BQ12829 278 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 SERTAD2Q14140 314 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 ZNF613Q6PF04 617 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 ZNF782Q6ZMW2 699 aaPredicted RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 OR5W2Q8NH69 310 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 OR1F2PQ96R84 312 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 CSF3RQ99062 836 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 CRB3Q9BUF7 120 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 TBCCD1Q9NVR7 557 aa13.97□□□□□ -0.17
CUX1-214ENST00000550008 YARS2Q9Y2Z4 477 aaKnown RBP13.97□□□□□ -0.17
CUX1-214ENST00000550008 SPEF1Q9Y4P9 236 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms