RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 LNX2Q8N448 690 aa17.13■□□□□ 0.33
PRPF40B-208ENST00000548436 ARIH2OSQ8N7S6 290 aa17.13■□□□□ 0.33
PRPF40B-208ENST00000548436 JAM3Q9BX67 310 aa17.13■□□□□ 0.33
PRPF40B-208ENST00000548436 MED31Q9Y3C7 131 aa17.13■□□□□ 0.33
PRPF40B-208ENST00000548436 A0A0B4J2E0 115 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 A0A1B0GX12 115 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 TRDV1A0A1B0GX56 115 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 OR2W5A6NFC9 320 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 CELP19835 753 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 CAV3P56539 151 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 ACSM1Q08AH1 577 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 CBX3Q13185 183 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 CARTPTQ16568 116 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 VASNQ6EMK4 673 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 GID4Q8IVV7 300 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 OR52N1Q8NH53 320 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 RIT1Q92963 219 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 MAP3K3Q99759 626 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 TMED9Q9BVK6 235 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 TPSD1Q9BZJ3 242 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 ISG20L2Q9H9L3 353 aaKnown RBP17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 TMEM27Q9HBJ8 222 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 HEATR5AQ86XA9 2040 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 TRAV27A0A087WT01 109 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 A0A1W2PQL4 384 aaPredicted RBP17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 SAGP10523 405 aaPredicted RBP17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 ACAA2P42765 397 aaKnown RBP17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 CTBP2P56545 445 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 FOXK2Q01167 660 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 INSL4Q14641 139 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 BAK1Q16611 211 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 ZNF322Q6U7Q0 402 aaPredicted RBP17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 MEPCEQ7L2J0 689 aaKnown RBP17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 BMP8AQ7Z5Y6 402 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 CDK20Q8IZL9 346 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 DEFB119Q8N690 84 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 VSTM2LQ96N03 204 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 HDHD5Q9BXW7 423 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 SRRQ9GZT4 340 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 FN3KQ9H479 309 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 TBC1D17Q9HA65 648 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 C14orf105Q9NVL8 296 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 DNAJB12Q9NXW2 375 aaKnown RBP17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 FBXL21Q9UKT6 434 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 GSTK1Q9Y2Q3 226 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 CLDN16Q9Y5I7 305 aa17.12■□□□□ 0.33
PRPF40B-208ENST00000548436 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 A0A1B0GWA3 101 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 SYNDIG1LA6NDD5 238 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 HRO43593 1189 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 AKAP8O43823 692 aaKnown RBP17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 RCBTB2O95199 551 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 WNT1P04628 370 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 CHRNB1P11230 501 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 RNH1P13489 461 aaKnown RBP17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 AZGP1P25311 298 aaKnown RBP17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 COPZ1P61923 177 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 BTG2P78543 158 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 STX4Q12846 297 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 KRR1Q13601 381 aaKnown RBP17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 PRPF38BQ5VTL8 546 aaKnown RBP17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 NPSR1Q6W5P4 371 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 SPATC1Q76KD6 591 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 SYT13Q7L8C5 426 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 KLBQ86Z14 1044 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 PTP4A1Q93096 173 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 KISS1RQ969F8 398 aaPredicted RBP17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 RBM18Q96H35 190 aaKnown RBP17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 TIMP4Q99727 224 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 IFT27Q9BW83 186 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 TMEM5Q9Y2B1 443 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 C12orf71A8MTZ7 269 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 SNPHO15079 494 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 CHP2O43745 196 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 PTP4A3O75365 173 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 NGFRP08138 427 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 FAM53BQ14153 422 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 ZNHIT3Q15649 155 aaPredicted RBP17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 GLYR1Q49A26 553 aaPredicted RBP17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 FCRLBQ6BAA4 426 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 GRAMD2AQ8IUY3 354 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 ARL14Q8N4G2 192 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 TMEM99Q8N816 258 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 GALNT6Q8NCL4 622 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 OR51A7Q8NH64 312 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 SPACA7Q96KW9 195 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 CMC2Q9NRP2 79 aa17.11■□□□□ 0.33
PRPF40B-208ENST00000548436 GABRPO00591 440 aa17.1■□□□□ 0.33
PRPF40B-208ENST00000548436 SRPX2O60687 465 aaPredicted RBP17.1■□□□□ 0.33
PRPF40B-208ENST00000548436 CTNSO60931 367 aa17.1■□□□□ 0.33
PRPF40B-208ENST00000548436 PAICSP22234 425 aaKnown RBP17.1■□□□□ 0.33
PRPF40B-208ENST00000548436 CSTF1Q05048 431 aaKnown RBP17.1■□□□□ 0.33
PRPF40B-208ENST00000548436 ZNF362Q5T0B9 420 aaPredicted RBP17.1■□□□□ 0.33
PRPF40B-208ENST00000548436 RPL13AP3Q6NVV1 102 aa17.1■□□□□ 0.33
PRPF40B-208ENST00000548436 CAMKK1Q8N5S9 505 aa17.1■□□□□ 0.33
PRPF40B-208ENST00000548436 ACBD7Q8N6N7 88 aa17.1■□□□□ 0.33
PRPF40B-208ENST00000548436 CELF2-AS1Q8N7Q2 184 aa17.1■□□□□ 0.33
PRPF40B-208ENST00000548436 FAM181AQ8N9Y4 354 aa17.1■□□□□ 0.33
PRPF40B-208ENST00000548436 SLC37A3Q8NCC5 494 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms